Result : P0AB50
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YchH |
| NCBI Accession ID | AE014075.1 |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | 1498667 |
| Right | 1498945 |
| Strand | + |
| Nucleotide Sequence | ATGAAACGCAAAAACGCTTCGTTACTCGGTAACGTGCTCATGGGGTTGGGTCTGGTGGTAATGGTGGTCGGCGTGGGGTATTCAATCCTCAACCAGTTACCACAGTTTAATATGCCCCAGTATTTCGCACATGGTGCTGTGCTAAGTATTTTCGTCGGTGCGATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGACAATCGCCGTCATAGCTAA |
| Sequence | MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl23927. Profile Description: Protein of unknown function (DUF2583). Some members in this family of proteins are annotated as YchH however currently no function is known. |
| Pubmed ID | 12471157 |
| Domain | CDD:420096 |
| Functional Category | Others |
| Uniprot ID | P0AB50 |
| ORF Length (Amino Acid) | 92 |
++ More..
| Conservation Analysis |
No. of Species: 128
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2482441 | 2482719 | - | NZ_LR134340.1 | Escherichia marmotae |
| 2 | 1258791 | 1259069 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1253593 | 1253871 | + | NZ_AP014857.1 | Escherichia albertii |
| 4 | 1704810 | 1705088 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 1255672 | 1255950 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 6 | 2443759 | 2444037 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 7 | 1923472 | 1923750 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 8 | 1960632 | 1960907 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 9 | 4245071 | 4245346 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 10 | 2670600 | 2670875 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 11 | 2707297 | 2707572 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 12 | 2028893 | 2029165 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 13 | 551199 | 551474 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 14 | 2676424 | 2676699 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 15 | 4584800 | 4585075 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 16 | 2796915 | 2797190 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 17 | 1918931 | 1919206 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 18 | 747877 | 748152 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 19 | 2906253 | 2906528 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 20 | 2643858 | 2644133 | - | NC_015968.1 | Enterobacter soli |
| 21 | 1491951 | 1492226 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 22 | 2159538 | 2159813 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 23 | 1937658 | 1937930 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 24 | 4184003 | 4184287 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 25 | 1893760 | 1894035 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 26 | 4390991 | 4391269 | - | NZ_CP053416.1 | Salmonella bongori |
| 27 | 2254728 | 2255006 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 28 | 1230543 | 1230821 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 29 | 4076770 | 4077048 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 30 | 2879790 | 2880068 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 31 | 315543 | 315821 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 32 | 3413777 | 3414055 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 33 | 793136 | 793414 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 34 | 1294848 | 1295126 | - | NZ_CP038469.1 | Citrobacter tructae |
| 35 | 1880557 | 1880835 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 36 | 1519765 | 1520043 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 37 | 455227 | 455508 | - | NZ_CP033744.1 | Citrobacter freundii |
| 38 | 2549623 | 2549901 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 39 | 4601303 | 4601584 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 40 | 2088363 | 2088635 | - | NZ_CP032487.1 | Yersinia hibernica |
| 41 | 2561276 | 2561548 | - | NZ_CP043727.1 | Yersinia canariae |
| 42 | 1963466 | 1963738 | + | NZ_CP050150.1 | Hafnia alvei |
| 43 | 2076516 | 2076788 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 44 | 970267 | 970542 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 45 | 2308225 | 2308497 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 46 | 3955644 | 3955916 | + | NZ_CP007230.1 | Yersinia similis |
| 47 | 135623 | 135901 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 48 | 669257 | 669529 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 49 | 2030766 | 2031038 | + | NZ_CP046293.1 | Yersinia intermedia |
| 50 | 4304680 | 4304961 | - | NZ_CP065640.1 | Serratia rubidaea |
| 51 | 3752983 | 3753255 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 52 | 2024034 | 2024312 | - | NZ_LR134201.1 | Cedecea lapagei |
| 53 | 3329148 | 3329426 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 54 | 1741190 | 1741462 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 55 | 3127293 | 3127568 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 56 | 2485356 | 2485628 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 57 | 2984336 | 2984614 | - | NZ_CP071320.1 | Serratia ureilytica |
| 58 | 2017501 | 2017779 | + | NZ_CP023525.1 | Cedecea neteri |
| 59 | 2438112 | 2438387 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 60 | 2153874 | 2154152 | + | NZ_LR134494.1 | Serratia quinivorans |
| 61 | 2209414 | 2209689 | + | NZ_CP050508.1 | Raoultella terrigena |
| 62 | 2751110 | 2751385 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 63 | 5066782 | 5067057 | - | NZ_CP026047.1 | Raoultella planticola |
| 64 | 1537547 | 1537819 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 65 | 3991695 | 3991961 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 66 | 1389654 | 1389932 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 67 | 2006381 | 2006656 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 68 | 3231179 | 3231454 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 69 | 2055104 | 2055379 | + | NZ_CP054254.1 | Klebsiella variicola |
| 70 | 2099001 | 2099279 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 71 | 3446531 | 3446806 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 72 | 2482934 | 2483206 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 73 | 445591 | 445866 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 74 | 2674238 | 2674513 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 75 | 2112251 | 2112529 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 76 | 2412472 | 2412744 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 77 | 2138296 | 2138571 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 78 | 2201470 | 2201745 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 79 | 2369732 | 2370007 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 80 | 2421178 | 2421453 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 81 | 2066654 | 2066935 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 82 | 2116904 | 2117179 | + | NZ_CP041247.1 | Raoultella electrica |
| 83 | 397137 | 397412 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 84 | 2601063 | 2601338 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 85 | 2087115 | 2087393 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 86 | 185063 | 185335 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 87 | 1761472 | 1761756 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 88 | 1199121 | 1199399 | + | NZ_CP067057.1 | Rahnella aceris |
| 89 | 2165330 | 2165599 | + | NZ_LT615367.1 | Dickeya aquatica |
| 90 | 2487422 | 2487691 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 91 | 4636218 | 4636487 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 92 | 275618 | 275887 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 93 | 2598498 | 2598767 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 94 | 2425399 | 2425668 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 95 | 2431017 | 2431295 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 96 | 2532369 | 2532638 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 97 | 2383454 | 2383729 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 98 | 2451749 | 2452018 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 99 | 2202877 | 2203146 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 100 | 2419613 | 2419882 | - | NZ_CP025799.1 | Dickeya zeae |
| 101 | 2136818 | 2137099 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 102 | 5180732 | 5181010 | - | NZ_CP011254.1 | Serratia fonticola |
| 103 | 2249149 | 2249418 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 104 | 1667123 | 1667410 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 105 | 2096986 | 2097255 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 106 | 1863249 | 1863518 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 107 | 1705846 | 1706115 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 108 | 1489216 | 1489485 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 109 | 1686752 | 1687027 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 110 | 2169629 | 2169907 | + | NZ_LT906479.1 | Serratia ficaria |
| 111 | 2430939 | 2431214 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 112 | 417505 | 417777 | + | NZ_CP009787.1 | Yersinia rohdei |
| 113 | 2376642 | 2376917 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 114 | 1144746 | 1145036 | + | NZ_CP028271.1 | Mixta intestinalis |
| 115 | 78993 | 79268 | + | NZ_CP049115.1 | Pantoea stewartii |
| 116 | 2684736 | 2684960 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 117 | 1825711 | 1825983 | - | NZ_CP065534.1 | Lonsdalea populi |
| 118 | 2334227 | 2334496 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 119 | 1275800 | 1276069 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 120 | 4061417 | 4061686 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 121 | 1719591 | 1719875 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 122 | 2032053 | 2032337 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 123 | 4246309 | 4246578 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 124 | 3053842 | 3054114 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 125 | 3931656 | 3931943 | - | NZ_CP019706.1 | Pantoea alhagi |
| 126 | 2108410 | 2108694 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 127 | 2369886 | 2370161 | - | NZ_CP038853.1 | Pantoea vagans |
| 128 | 1942519 | 1942803 | + | NZ_CP061511.1 | Mixta calida |
| 129 | 1993125 | 1993415 | + | NZ_CP026377.1 | Mixta gaviniae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05201.17 | 0.62 | 80 | 3507 | same-strand | Glutamyl-tRNAGlu reductase, N-terminal domain |
| 2 | PF01488.22 | 0.62 | 80 | 3507 | same-strand | Shikimate / quinate 5-dehydrogenase |
| 3 | PF00745.22 | 0.62 | 80 | 3507 | same-strand | Glutamyl-tRNAGlu reductase, dimerisation domain |
| 4 | PF03550.16 | 0.93 | 119 | 3410.0 | opposite-strand | Outer membrane lipoprotein LolB |
| 5 | PF00288.28 | 0.93 | 119 | 2533.5 | opposite-strand | GHMP kinases N terminal domain |
| 6 | PF13793.8 | 0.95 | 122 | 1425 | opposite-strand | N-terminal domain of ribose phosphate pyrophosphokinase |
| 7 | PF01195.21 | 1.0 | 128 | 275 | opposite-strand | Peptidyl-tRNA hydrolase |
| 8 | PF06071.15 | 0.97 | 124 | 990 | opposite-strand | Protein of unknown function (DUF933) |
++ More..