Result : P0AB34
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Biofilm regulator BssS |
| NCBI Accession ID | |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGTEVGQTLWLTTDVARQFISILEAGIAKIESGDFQVNEYRRH |
| Source of smORF | Swiss-Prot |
| Function | Represses biofilm formation in M9C glu and LB glu media but not in M9C and LB media. Seems to act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signaling pathways. Could be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway (By similarity). {ECO:0000250}. |
| Pubmed ID | 12471157 |
| Domain | CDD:420099 |
| Functional Category | Others |
| Uniprot ID | P0AB34 |
| ORF Length (Amino Acid) | 84 |
++ More..
| Conservation Analysis |
No. of Species: 143
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1697928 | 1698182 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1120701 | 1120955 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1129498 | 1129752 | - | NZ_AP014857.1 | Escherichia albertii |
| 4 | 1764334 | 1764588 | - | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 1479983 | 1480237 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 3658313 | 3658567 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 7 | 3412122 | 3412376 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 8 | 1247641 | 1247895 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 9 | 518837 | 519091 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 10 | 4599031 | 4599285 | - | NZ_CP033744.1 | Citrobacter freundii |
| 11 | 1865633 | 1865887 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 12 | 1217918 | 1218172 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 13 | 905589 | 905843 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 14 | 1577138 | 1577392 | + | NZ_CP038469.1 | Citrobacter tructae |
| 15 | 1886440 | 1886694 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 16 | 1153749 | 1154003 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 17 | 3311250 | 3311504 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 18 | 2871886 | 2872140 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 19 | 1184177 | 1184431 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 20 | 1884473 | 1884727 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 21 | 2510543 | 2510797 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 22 | 2796272 | 2796526 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 23 | 1761838 | 1762092 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 24 | 3636858 | 3637103 | - | NZ_CP053416.1 | Salmonella bongori |
| 25 | 1243846 | 1244100 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 26 | 629309 | 629563 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 27 | 1749476 | 1749730 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 28 | 1715039 | 1715293 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 29 | 4240205 | 4240459 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 30 | 930389 | 930643 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 31 | 1781048 | 1781302 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 32 | 2804377 | 2804631 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 33 | 1984861 | 1985115 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 34 | 3210410 | 3210664 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 35 | 791737 | 791991 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 36 | 1745133 | 1745387 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 37 | 1734448 | 1734702 | - | NC_015968.1 | Enterobacter soli |
| 38 | 3028231 | 3028485 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 39 | 63416 | 63670 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 40 | 3596023 | 3596277 | + | NZ_CP050508.1 | Raoultella terrigena |
| 41 | 3605419 | 3605673 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 42 | 3771442 | 3771696 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 43 | 3238572 | 3238826 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 44 | 2015251 | 2015505 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 45 | 3486842 | 3487096 | + | NZ_CP054254.1 | Klebsiella variicola |
| 46 | 3279624 | 3279878 | + | NZ_CP041247.1 | Raoultella electrica |
| 47 | 3776516 | 3776770 | - | NZ_CP026047.1 | Raoultella planticola |
| 48 | 3482803 | 3483057 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 49 | 3098180 | 3098437 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 50 | 2787679 | 2787933 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 51 | 2487550 | 2487804 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 52 | 3338753 | 3339007 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 53 | 2884238 | 2884492 | + | NZ_LR134201.1 | Cedecea lapagei |
| 54 | 2484422 | 2484676 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 55 | 2373759 | 2374013 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 56 | 1671598 | 1671852 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 57 | 3103870 | 3104124 | + | NZ_CP023525.1 | Cedecea neteri |
| 58 | 1739459 | 1739713 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 59 | 1658897 | 1659151 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 60 | 1708462 | 1708716 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 61 | 1868573 | 1868827 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 62 | 1831245 | 1831499 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 63 | 2313542 | 2313796 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 64 | 1564371 | 1564625 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 65 | 1532387 | 1532641 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 66 | 1863144 | 1863398 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 67 | 2869928 | 2870182 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 68 | 3000420 | 3000674 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 69 | 1026369 | 1026623 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 70 | 4808023 | 4808277 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 71 | 3077050 | 3077304 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 72 | 1518902 | 1519156 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 73 | 1797007 | 1797261 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 74 | 1820476 | 1820730 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 75 | 1648792 | 1649046 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 76 | 4493902 | 4494156 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 77 | 1888049 | 1888303 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 78 | 2009731 | 2009985 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 79 | 943412 | 943666 | - | NZ_CP028271.1 | Mixta intestinalis |
| 80 | 4167839 | 4168093 | + | NZ_CP019706.1 | Pantoea alhagi |
| 81 | 1704377 | 1704631 | - | NZ_CP061511.1 | Mixta calida |
| 82 | 1761701 | 1761955 | - | NZ_CP026377.1 | Mixta gaviniae |
| 83 | 1988840 | 1989094 | + | NZ_CP067057.1 | Rahnella aceris |
| 84 | 1206208 | 1206462 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 85 | 1515963 | 1516217 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 86 | 2912575 | 2912829 | + | NZ_CP025799.1 | Dickeya zeae |
| 87 | 2943134 | 2943388 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 88 | 251235 | 251489 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 89 | 3005687 | 3005941 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 90 | 4712032 | 4712286 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 91 | 1982885 | 1983139 | - | NZ_LR134494.1 | Serratia quinivorans |
| 92 | 1733263 | 1733517 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 93 | 4539203 | 4539457 | + | NZ_CP007230.1 | Yersinia similis |
| 94 | 1962000 | 1962254 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 95 | 3894223 | 3894477 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 96 | 2656452 | 2656706 | + | NZ_CP046293.1 | Yersinia intermedia |
| 97 | 1894259 | 1894513 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 98 | 3085289 | 3085543 | + | NZ_CP071320.1 | Serratia ureilytica |
| 99 | 1277789 | 1278043 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 100 | 2046016 | 2046270 | - | NZ_LT906479.1 | Serratia ficaria |
| 101 | 1975788 | 1976042 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 102 | 1836789 | 1837043 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 103 | 933876 | 934130 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 104 | 1026868 | 1027122 | + | NZ_CP009787.1 | Yersinia rohdei |
| 105 | 2866349 | 2866603 | + | NZ_LT615367.1 | Dickeya aquatica |
| 106 | 1382432 | 1382686 | - | NZ_CP032487.1 | Yersinia hibernica |
| 107 | 4324452 | 4324706 | - | NZ_CP011254.1 | Serratia fonticola |
| 108 | 237690 | 237944 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 109 | 1993833 | 1994087 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 110 | 51110 | 51364 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 111 | 2653756 | 2654010 | + | NZ_CP050150.1 | Hafnia alvei |
| 112 | 1480733 | 1480987 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 113 | 3437995 | 3438249 | - | NZ_CP065640.1 | Serratia rubidaea |
| 114 | 3158849 | 3159103 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 115 | 3975178 | 3975432 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 116 | 55102 | 55356 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 117 | 1518452 | 1518706 | - | NZ_CP065534.1 | Lonsdalea populi |
| 118 | 2670425 | 2670679 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 119 | 2938328 | 2938582 | + | NZ_CP048796.1 | Providencia vermicola |
| 120 | 1918767 | 1919021 | - | NZ_CP043727.1 | Yersinia canariae |
| 121 | 4399252 | 4399506 | - | NZ_CP049115.1 | Pantoea stewartii |
| 122 | 1496104 | 1496358 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 123 | 2623834 | 2624088 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 124 | 2536661 | 2536915 | + | NZ_CP038853.1 | Pantoea vagans |
| 125 | 1577232 | 1577486 | - | NZ_CP015581.1 | Tatumella citrea |
| 126 | 2372006 | 2372260 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 127 | 2891462 | 2891710 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 128 | 2914155 | 2914409 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 129 | 3570619 | 3570873 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 130 | 30179 | 30433 | + | NZ_CP026364.1 | Proteus hauseri |
| 131 | 2061085 | 2061339 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 132 | 437756 | 438010 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 133 | 1793752 | 1794006 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 134 | 2882268 | 2882522 | + | NZ_LS483422.1 | Providencia heimbachae |
| 135 | 2524883 | 2525137 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 136 | 5010953 | 5011207 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 137 | 2277760 | 2278014 | - | NZ_CP029736.1 | Providencia rettgeri |
| 138 | 830341 | 830595 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 139 | 2239105 | 2239344 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 140 | 1843817 | 1844071 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 141 | 2165446 | 2165700 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 142 | 2809523 | 2809777 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 143 | 3106372 | 3106626 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 144 | 2033514 | 2033765 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01266.26 | 0.71 | 102 | 118 | same-strand | FAD dependent oxidoreductase |
| 2 | PF06183.15 | 0.88 | 126 | 323 | same-strand | DinI-like family |
| 3 | PF01979.22 | 0.95 | 136 | 652 | same-strand | Amidohydrolase family |
| 4 | PF17773.3 | 0.83 | 119 | 2731.5 | opposite-strand | UPF0176 acylphosphatase like domain |
| 5 | PF12368.10 | 0.83 | 119 | 2731.5 | opposite-strand | Rhodanase C-terminal |
| 6 | PF00581.22 | 0.83 | 119 | 2731.5 | opposite-strand | Rhodanese-like domain |
++ More..