Result : P0AB32
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YceK |
| NCBI Accession ID | AE005174.2 |
| Organism | Escherichia coli O157:H7 |
| Left | 1557806 |
| Right | 1558033 |
| Strand | + |
| Nucleotide Sequence | ATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCTGAGTGGCTGTGGCAGCATCATTAGCCGCACTATACCGGGGCAGGGGCATGGCAACCAATATTATCCCGGTGTGCAATGGGATGTGCGTGACTCCGCCTGGCGTTATGTCACAATCCTTGATCTGCCATTCTCCCTGGTTTTTGATACTTTACTGCTGCCGATCGACATTCATCATGGCCCGTATGAGTAA |
| Sequence | MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDSAWRYVTILDLPFSLVFDTLLLPIDIHHGPYE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11456. Profile Description: Protein of unknown function (DUF1375). hypothetical protein; Provisional |
| Pubmed ID | 11206551 11258796 |
| Domain | CDD:416280 |
| Functional Category | Others |
| Uniprot ID | P0AB32 |
| ORF Length (Amino Acid) | 75 |
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| Conservation Analysis |
No. of Species: 98
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1515890 | 1516117 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1113579 | 1113806 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1472861 | 1473088 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 912709 | 912936 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 5 | 1757205 | 1757432 | + | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 1123605 | 1123832 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 3665492 | 3665719 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 8 | 1210769 | 1210996 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 9 | 1873039 | 1873266 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 1584266 | 1584493 | - | NZ_CP038469.1 | Citrobacter tructae |
| 11 | 3405006 | 3405233 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 12 | 2503361 | 2503588 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 13 | 527978 | 528205 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 4589916 | 4590143 | + | NZ_CP033744.1 | Citrobacter freundii |
| 15 | 1862821 | 1863048 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 16 | 1879240 | 1879467 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 17 | 1240552 | 1240779 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 18 | 1159924 | 1160151 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 19 | 1727301 | 1727528 | + | NC_015968.1 | Enterobacter soli |
| 20 | 3035411 | 3035638 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 21 | 1236663 | 1236890 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 22 | 2801979 | 2802173 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 23 | 1752245 | 1752472 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 24 | 1742399 | 1742626 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 25 | 1754761 | 1754988 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 26 | 69321 | 69548 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 27 | 2809995 | 2810222 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 28 | 1707971 | 1708198 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 29 | 623444 | 623671 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 30 | 1773979 | 1774206 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 31 | 923302 | 923529 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 32 | 1877104 | 1877331 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 33 | 1964004 | 1964231 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 34 | 2793334 | 2793528 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 35 | 4233130 | 4233357 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 36 | 798833 | 799060 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 37 | 3318477 | 3318680 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 38 | 3216160 | 3216387 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 39 | 1191581 | 1191808 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 40 | 3770790 | 3771017 | + | NZ_CP026047.1 | Raoultella planticola |
| 41 | 3488553 | 3488780 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 42 | 3777222 | 3777449 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 43 | 3330316 | 3330543 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 44 | 3492591 | 3492818 | - | NZ_CP054254.1 | Klebsiella variicola |
| 45 | 3601773 | 3602000 | - | NZ_CP050508.1 | Raoultella terrigena |
| 46 | 2009542 | 2009769 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 47 | 3285354 | 3285581 | - | NZ_CP041247.1 | Raoultella electrica |
| 48 | 3611191 | 3611418 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 49 | 3111026 | 3111229 | - | NZ_CP023525.1 | Cedecea neteri |
| 50 | 2887759 | 2887986 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 51 | 3244321 | 3244548 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 52 | 2898598 | 2898792 | - | NZ_LR134201.1 | Cedecea lapagei |
| 53 | 3092644 | 3092871 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 54 | 2493394 | 2493621 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 55 | 1653195 | 1653422 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 56 | 1702759 | 1702986 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 57 | 1745185 | 1745412 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 58 | 2490150 | 2490377 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 59 | 2379483 | 2379710 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 60 | 1516426 | 1516662 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 61 | 1817796 | 1817987 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 62 | 2922630 | 2922869 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 63 | 2543165 | 2543365 | - | NZ_CP038853.1 | Pantoea vagans |
| 64 | 1489665 | 1489865 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 65 | 1509744 | 1509962 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 66 | 2630336 | 2630536 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 67 | 1557732 | 1557923 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 68 | 1665900 | 1666127 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 69 | 2006032 | 2006247 | - | NZ_CP067057.1 | Rahnella aceris |
| 70 | 250959 | 251174 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 71 | 3629780 | 3630007 | + | NZ_CP053416.1 | Salmonella bongori |
| 72 | 945906 | 946097 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 73 | 2899262 | 2899474 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 74 | 2321123 | 2321335 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 75 | 4549448 | 4549645 | - | NZ_CP007230.1 | Yersinia similis |
| 76 | 1965473 | 1965673 | + | NZ_LR134494.1 | Serratia quinivorans |
| 77 | 4393017 | 4393241 | + | NZ_CP049115.1 | Pantoea stewartii |
| 78 | 4305958 | 4306158 | + | NZ_CP011254.1 | Serratia fonticola |
| 79 | 1899556 | 1899753 | + | NZ_CP043727.1 | Yersinia canariae |
| 80 | 2029703 | 2029894 | + | NZ_LT906479.1 | Serratia ficaria |
| 81 | 1723079 | 1723291 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 82 | 1875243 | 1875470 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 83 | 1045980 | 1046171 | - | NZ_CP009787.1 | Yersinia rohdei |
| 84 | 1258564 | 1258761 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 85 | 1957858 | 1958055 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 86 | 3103135 | 3103332 | - | NZ_CP071320.1 | Serratia ureilytica |
| 87 | 1975432 | 1975623 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 88 | 2676063 | 2676260 | - | NZ_CP046293.1 | Yersinia intermedia |
| 89 | 244181 | 244393 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 90 | 1370134 | 1370331 | + | NZ_CP032487.1 | Yersinia hibernica |
| 91 | 3037561 | 3037773 | + | NZ_CP065534.1 | Lonsdalea populi |
| 92 | 3422011 | 3422208 | + | NZ_CP065640.1 | Serratia rubidaea |
| 93 | 1942815 | 1943024 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 94 | 2052965 | 2053159 | + | NZ_CP050150.1 | Hafnia alvei |
| 95 | 1695478 | 1695669 | + | NZ_CP061511.1 | Mixta calida |
| 96 | 1752787 | 1752984 | + | NZ_CP026377.1 | Mixta gaviniae |
| 97 | 934536 | 934742 | + | NZ_CP028271.1 | Mixta intestinalis |
| 98 | 1571002 | 1571229 | + | NZ_CP015581.1 | Tatumella citrea |
| 99 | 4176914 | 4177111 | - | NZ_CP019706.1 | Pantoea alhagi |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01661.23 | 0.65 | 64 | 6998 | same-strand | Macro domain |
| 2 | PF01757.24 | 0.94 | 92 | 4451 | opposite-strand | Acyltransferase family |
| 3 | PF04349.14 | 0.97 | 95 | 2644.0 | same-strand | Periplasmic glucan biosynthesis protein, MdoG |
| 4 | PF00535.28 | 0.97 | 95 | 112.0 | same-strand | Glycosyl transferase family 2 |
| 5 | PF13632.8 | 0.97 | 95 | 112.0 | same-strand | Glycosyl transferase family group 2 |
| 6 | PF13506.8 | 0.97 | 95 | 112.0 | same-strand | Glycosyl transferase family 21 |
| 7 | PF13984.8 | 0.89 | 87 | 3.0 | opposite-strand | MsyB protein |
| 8 | PF03279.15 | 0.8 | 78 | 1850 | opposite-strand | Bacterial lipid A biosynthesis acyltransferase |
| 9 | PF17773.3 | 0.71 | 70 | 2987 | same-strand | UPF0176 acylphosphatase like domain |
| 10 | PF12368.10 | 0.71 | 70 | 2987 | same-strand | Rhodanase C-terminal |
| 11 | PF00581.22 | 0.71 | 70 | 2987 | same-strand | Rhodanese-like domain |
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