Result : P0AAX4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YbiJ |
| NCBI Accession ID | AE014075.1 |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | 859986 |
| Right | 860246 |
| Strand | - |
| Nucleotide Sequence | ATGAAAACTATCAATACTGTTGTTGCTGCTATGGCTCTTTCAACTCTGTCATTTGGTGTGTTCGCGGCGGAACCGGTAACGGCATCCCAGGCACAGAACATGAATAAAATCGGCGTGGTTTCTGCCGATGGCGCATCCACCCTCGATGCCCTGGAAGCGAAACTGGCTGAGAAAGCCGCGGCGGCCGGTGCCAGTGGATACAGCATCACTTCTGCCACCAACAACAATAAATTAAGCGGTACTGCGGTAATTTATAAGTAA |
| Sequence | MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSGTAVIYK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11507. Profile Description: Protein of unknown function (DUF1471). hypothetical protein; Provisional |
| Pubmed ID | 12471157 |
| Domain | CDD:416304 |
| Functional Category | Others |
| Uniprot ID | P0AAX4 |
| ORF Length (Amino Acid) | 86 |
++ More..
| Conservation Analysis |
No. of Species: 113
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1307357 | 1307617 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 2 | 780290 | 780550 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 837665 | 837925 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 835472 | 835732 | - | NZ_AP014857.1 | Escherichia albertii |
| 5 | 962106 | 962366 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 2868114 | 2868374 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 7 | 1481913 | 1482173 | - | NZ_LR134340.1 | Escherichia marmotae |
| 8 | 1530974 | 1531234 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 9 | 1528629 | 1528889 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 10 | 747639 | 747899 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 11 | 3434095 | 3434355 | - | NZ_CP026047.1 | Raoultella planticola |
| 12 | 3815666 | 3815923 | + | NZ_CP026047.1 | Raoultella planticola |
| 13 | 3647982 | 3648242 | + | NZ_CP041247.1 | Raoultella electrica |
| 14 | 3240877 | 3241134 | - | NZ_CP041247.1 | Raoultella electrica |
| 15 | 2147374 | 2147634 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 16 | 2146367 | 2146627 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 17 | 3065653 | 3065913 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 18 | 4007733 | 4007993 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 19 | 3035470 | 3035730 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 20 | 2734466 | 2734723 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 21 | 3161899 | 3162159 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 22 | 2819830 | 2820087 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 23 | 78568 | 78828 | - | NZ_CP038469.1 | Citrobacter tructae |
| 24 | 4364351 | 4364611 | - | NZ_CP033744.1 | Citrobacter freundii |
| 25 | 3071750 | 3072010 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 26 | 2755866 | 2756123 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 27 | 4147846 | 4148106 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 28 | 1558402 | 1558662 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 29 | 2910940 | 2911200 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 30 | 3370036 | 3370296 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 31 | 2695466 | 2695726 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 32 | 3146396 | 3146653 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 33 | 3676154 | 3676414 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 34 | 1534267 | 1534527 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 35 | 890465 | 890725 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 36 | 337270 | 337530 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 37 | 3369458 | 3369718 | - | NZ_CP053416.1 | Salmonella bongori |
| 38 | 2078867 | 2079127 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 39 | 1464924 | 1465184 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 40 | 3797042 | 3797302 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 41 | 3438673 | 3438930 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 42 | 888951 | 889211 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 43 | 1426770 | 1427030 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 44 | 3160531 | 3160791 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 45 | 1123247 | 1123507 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 46 | 1457918 | 1458178 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 47 | 1388229 | 1388489 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 48 | 4025049 | 4025306 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 49 | 1836929 | 1837156 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 50 | 4017154 | 4017411 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 51 | 27339 | 27596 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 52 | 32561 | 32818 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 53 | 2246523 | 2246750 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 54 | 42069 | 42326 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 55 | 1630534 | 1630791 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 56 | 1622614 | 1622871 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 57 | 616879 | 617139 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 58 | 27091 | 27348 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 59 | 35051 | 35308 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 60 | 1631064 | 1631324 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 61 | 2034254 | 2034511 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 62 | 3959811 | 3960071 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 63 | 3547595 | 3547855 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 64 | 3200217 | 3200474 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 65 | 3769069 | 3769329 | + | NZ_CP054254.1 | Klebsiella variicola |
| 66 | 3377836 | 3378096 | + | NZ_CP023525.1 | Cedecea neteri |
| 67 | 3045737 | 3045994 | - | NZ_CP023525.1 | Cedecea neteri |
| 68 | 1439303 | 1439563 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 69 | 1798766 | 1799023 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 70 | 3034917 | 3035174 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 71 | 4879259 | 4879516 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 72 | 2296058 | 2296285 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 73 | 4871345 | 4871602 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 74 | 39876 | 40136 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 75 | 3158629 | 3158889 | + | NZ_LR134201.1 | Cedecea lapagei |
| 76 | 2819065 | 2819322 | - | NZ_LR134201.1 | Cedecea lapagei |
| 77 | 1722798 | 1723058 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 78 | 2055250 | 2055507 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 79 | 4171183 | 4171443 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 80 | 3728515 | 3728772 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 81 | 26203 | 26460 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 82 | 2179263 | 2179490 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 83 | 34141 | 34398 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 84 | 27098 | 27355 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 85 | 3022513 | 3022767 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 86 | 35057 | 35314 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 87 | 2597257 | 2597517 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 88 | 3599011 | 3599271 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 89 | 4638579 | 4638839 | + | NZ_CP007230.1 | Yersinia similis |
| 90 | 2565446 | 2565706 | + | NZ_CP032487.1 | Yersinia hibernica |
| 91 | 3156616 | 3156876 | + | NZ_CP043727.1 | Yersinia canariae |
| 92 | 3167839 | 3168099 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 93 | 2254577 | 2254837 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 94 | 3996173 | 3996433 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 95 | 3553139 | 3553396 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 96 | 3939253 | 3939513 | + | NZ_CP050508.1 | Raoultella terrigena |
| 97 | 3554867 | 3555124 | - | NZ_CP050508.1 | Raoultella terrigena |
| 98 | 1639936 | 1640196 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 99 | 2792691 | 2792951 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 100 | 2861141 | 2861401 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 101 | 21715 | 21975 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 102 | 2899504 | 2899761 | - | NZ_CP065640.1 | Serratia rubidaea |
| 103 | 1010304 | 1010564 | + | NZ_CP065640.1 | Serratia rubidaea |
| 104 | 246281 | 246541 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 105 | 2005660 | 2005917 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 106 | 2209646 | 2209897 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 107 | 2301506 | 2301745 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 108 | 4327681 | 4327938 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 109 | 2856215 | 2856475 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 110 | 930760 | 931014 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 111 | 1489447 | 1489707 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 112 | 1395518 | 1395775 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 113 | 1395979 | 1396236 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 114 | 4788943 | 4789203 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 115 | 89920 | 90177 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 116 | 4801900 | 4802151 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 117 | 4707090 | 4707329 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 118 | 2108662 | 2108922 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 119 | 852902 | 853162 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 120 | 768874 | 769131 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 121 | 2801336 | 2801596 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 122 | 1461764 | 1462021 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 123 | 1546765 | 1547025 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 124 | 2847650 | 2847910 | + | NZ_LT906479.1 | Serratia ficaria |
| 125 | 1521929 | 1522186 | - | NZ_LT906479.1 | Serratia ficaria |
| 126 | 1521467 | 1521724 | - | NZ_LT906479.1 | Serratia ficaria |
| 127 | 72973 | 73230 | - | NZ_LT615367.1 | Dickeya aquatica |
| 128 | 58721 | 58972 | + | NZ_LT615367.1 | Dickeya aquatica |
| 129 | 4312408 | 4312647 | - | NZ_LT615367.1 | Dickeya aquatica |
| 130 | 1664332 | 1664589 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 131 | 1672271 | 1672528 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 132 | 3656632 | 3656889 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 133 | 3648656 | 3648913 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 134 | 1998935 | 1999195 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 135 | 4546995 | 4547252 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 136 | 4109019 | 4109264 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 137 | 1393457 | 1393717 | - | NC_015968.1 | Enterobacter soli |
| 138 | 1119055 | 1119315 | - | NZ_LR134531.1 | Pragia fontium |
| 139 | 1413008 | 1413268 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 140 | 2721414 | 2721674 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 141 | 368106 | 368366 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 142 | 512342 | 512602 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 143 | 2627897 | 2628157 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 144 | 4348930 | 4349190 | - | NZ_CP009787.1 | Yersinia rohdei |
| 145 | 580218 | 580478 | - | NZ_CP009787.1 | Yersinia rohdei |
| 146 | 1096100 | 1096357 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 147 | 1570664 | 1570924 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 148 | 1487826 | 1488083 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 149 | 4905713 | 4905973 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 150 | 2844999 | 2845259 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 151 | 2285835 | 2286095 | - | NZ_CP071320.1 | Serratia ureilytica |
| 152 | 3509603 | 3509863 | + | NZ_CP071320.1 | Serratia ureilytica |
| 153 | 3593386 | 3593643 | + | NZ_CP071320.1 | Serratia ureilytica |
| 154 | 3593837 | 3594094 | + | NZ_CP071320.1 | Serratia ureilytica |
| 155 | 1220632 | 1220892 | + | NZ_CP011254.1 | Serratia fonticola |
| 156 | 4964868 | 4965128 | + | NZ_CP011254.1 | Serratia fonticola |
| 157 | 3678555 | 3678812 | - | NZ_CP011254.1 | Serratia fonticola |
| 158 | 103051 | 103311 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 159 | 85877 | 86128 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 160 | 4276060 | 4276311 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 161 | 4205311 | 4205550 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 162 | 2237545 | 2237802 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 163 | 2686242 | 2686499 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 164 | 4639212 | 4639469 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 165 | 38815 | 39066 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 166 | 121719 | 121958 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 167 | 4826348 | 4826608 | + | NZ_LR134494.1 | Serratia quinivorans |
| 168 | 2893206 | 2893466 | + | NZ_LR134494.1 | Serratia quinivorans |
| 169 | 1468834 | 1469091 | - | NZ_LR134494.1 | Serratia quinivorans |
| 170 | 2734473 | 2734724 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 171 | 2955215 | 2955472 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 172 | 2940804 | 2941055 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 173 | 2933714 | 2933965 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 174 | 2636792 | 2637031 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 175 | 2028802 | 2029059 | + | NZ_CP038853.1 | Pantoea vagans |
| 176 | 4018696 | 4018944 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 177 | 4752227 | 4752484 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 178 | 124125 | 124364 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 179 | 2040260 | 2040517 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 180 | 597863 | 598120 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 181 | 3498211 | 3498471 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 182 | 597412 | 597672 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 183 | 1418068 | 1418328 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 184 | 2563064 | 2563324 | + | NZ_LS483470.1 | Leminorella richardii |
| 185 | 1462703 | 1462963 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 186 | 3729635 | 3729892 | + | NZ_CP065534.1 | Lonsdalea populi |
| 187 | 3532996 | 3533256 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 188 | 4613038 | 4613289 | - | NZ_CP025799.1 | Dickeya zeae |
| 189 | 4594841 | 4595101 | + | NZ_CP025799.1 | Dickeya zeae |
| 190 | 147255 | 147494 | + | NZ_CP025799.1 | Dickeya zeae |
| 191 | 345563 | 345784 | + | NZ_CP067059.1 | Rahnella aceris |
| 192 | 9476 | 9688 | + | NZ_CP015581.1 | Tatumella citrea |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP014857.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02885.19 | 0.65 | 73 | 129 | opposite-strand | Glycosyl transferase family, helical bundle domain |
| 2 | PF00005.29 | 0.69 | 78 | 4257.5 | same-strand | ABC transporter |
++ More..