Result : P0AAV0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YbgE |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 774309 |
| Right | 774602 |
| Strand | + |
| Nucleotide Sequence | ATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGCTTCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGAAGACCAGTGAACTGGAAATCTGGCATGGTTTATTGCTGATGTGGGCCGTCTGTGCTGGTGTGATTCACGGCGTGGGCTTTCGTCCGCAGAAGGTTCTTTGGCAAGGGATTTTTTGCCCATTGCTTGCCGATATTGTTCTCATTGTCGGGCTGATTTTCTTCTTCTTTTAA |
| Sequence | MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11451. Profile Description: Cyd operon protein YbgE (Cyd_oper_YbgE). hypothetical protein; Provisional |
| Pubmed ID | 8905232 9278503 16738553 2843510 7984428 9068659 23749980 |
| Domain | CDD:416276 |
| Functional Category | Others |
| Uniprot ID | P0AAV0 |
| ORF Length (Amino Acid) | 97 |
++ More..
| Conservation Analysis |
No. of Species: 138
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2967290 | 2967583 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1406256 | 1406549 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 3 | 582630 | 582923 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 774309 | 774602 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 5 | 858816 | 859109 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 1418914 | 1419207 | + | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 761020 | 761313 | + | NZ_AP014857.1 | Escherichia albertii |
| 8 | 1392253 | 1392513 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 9 | 1564186 | 1564446 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 10 | 1360471 | 1360731 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 11 | 3894037 | 3894297 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 12 | 551079 | 551339 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 13 | 3219160 | 3219456 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 14 | 277102 | 277395 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 15 | 1327144 | 1327404 | + | NC_015968.1 | Enterobacter soli |
| 16 | 1372873 | 1373133 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 17 | 1189681 | 1189941 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 18 | 3277536 | 3277829 | - | NZ_LR134201.1 | Cedecea lapagei |
| 19 | 3501474 | 3501767 | - | NZ_CP023525.1 | Cedecea neteri |
| 20 | 2978518 | 2978811 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 21 | 4008638 | 4008898 | - | NZ_CP050508.1 | Raoultella terrigena |
| 22 | 3437319 | 3437603 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 23 | 3295763 | 3296023 | + | NZ_CP053416.1 | Salmonella bongori |
| 24 | 2144596 | 2144856 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 25 | 1321229 | 1321489 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 26 | 1485221 | 1485514 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 27 | 812541 | 812801 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 28 | 2224282 | 2224575 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 29 | 4215712 | 4216005 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 30 | 2605955 | 2606248 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 31 | 3745346 | 3745639 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 32 | 2736822 | 2737115 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 33 | 4296431 | 4296724 | + | NZ_CP033744.1 | Citrobacter freundii |
| 34 | 1525011 | 1525304 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 35 | 809962 | 810255 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 36 | 1879213 | 1879506 | - | NZ_CP038469.1 | Citrobacter tructae |
| 37 | 1598270 | 1598563 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 38 | 1461380 | 1461673 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 39 | 1464165 | 1464458 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 40 | 316782 | 317075 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 41 | 1395456 | 1395749 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 42 | 1351023 | 1351316 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 43 | 2694577 | 2694870 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 44 | 2991270 | 2991563 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 45 | 3231816 | 3232109 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 46 | 4081562 | 4081855 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 47 | 2789550 | 2789843 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 48 | 3145009 | 3145302 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 49 | 2067355 | 2067648 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 50 | 3361969 | 3362262 | + | NZ_CP026047.1 | Raoultella planticola |
| 51 | 3671613 | 3671873 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 52 | 3869249 | 3869542 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 53 | 1351323 | 1351616 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 54 | 3718801 | 3719094 | - | NZ_CP041247.1 | Raoultella electrica |
| 55 | 1403630 | 1403923 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 56 | 4249646 | 4249906 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 57 | 4087380 | 4087640 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 58 | 3634520 | 3634780 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 59 | 1642411 | 1642671 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 60 | 133251 | 133544 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 61 | 1579300 | 1579593 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 62 | 331632 | 331925 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 63 | 747505 | 747798 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 64 | 1527195 | 1527488 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 65 | 3344818 | 3345111 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 66 | 3523099 | 3523392 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 67 | 1342336 | 1342629 | + | NZ_CP050150.1 | Hafnia alvei |
| 68 | 1531642 | 1531935 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 69 | 804697 | 804990 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 70 | 1197108 | 1197401 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 71 | 3394614 | 3394907 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 72 | 2324125 | 2324418 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 73 | 2749429 | 2749722 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 74 | 4663569 | 4663856 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 75 | 2700443 | 2700736 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 76 | 628656 | 628940 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 77 | 3890619 | 3890903 | - | NZ_CP054254.1 | Klebsiella variicola |
| 78 | 3318514 | 3318807 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 79 | 3735736 | 3736020 | - | NZ_CP071320.1 | Serratia ureilytica |
| 80 | 1322947 | 1323231 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 81 | 1266750 | 1267013 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 82 | 1325856 | 1326146 | + | NZ_LR134494.1 | Serratia quinivorans |
| 83 | 1250634 | 1250927 | + | NZ_CP065534.1 | Lonsdalea populi |
| 84 | 1007107 | 1007400 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 85 | 2709368 | 2709661 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 86 | 3310000 | 3310260 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 87 | 2158428 | 2158721 | - | NZ_CP067057.1 | Rahnella aceris |
| 88 | 1197045 | 1197338 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 89 | 3553052 | 3553333 | + | NZ_CP011254.1 | Serratia fonticola |
| 90 | 1318791 | 1319084 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 91 | 1349876 | 1350169 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 92 | 1389879 | 1390139 | + | NZ_CP025799.1 | Dickeya zeae |
| 93 | 3556343 | 3556636 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 94 | 1451919 | 1452212 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 95 | 2983510 | 2983803 | - | NZ_LT615367.1 | Dickeya aquatica |
| 96 | 2318560 | 2318853 | - | NZ_LS483470.1 | Leminorella richardii |
| 97 | 2952763 | 2953023 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 98 | 1430829 | 1431122 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 99 | 2196311 | 2196604 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 100 | 2390829 | 2391122 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 101 | 3198572 | 3198868 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 102 | 1482361 | 1482654 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 103 | 3082188 | 3082460 | + | NZ_CP007230.1 | Yersinia similis |
| 104 | 3171400 | 3171672 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 105 | 1402847 | 1403137 | + | NZ_LT906479.1 | Serratia ficaria |
| 106 | 2790112 | 2790405 | + | NZ_CP065640.1 | Serratia rubidaea |
| 107 | 1367180 | 1367443 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 108 | 2631356 | 2631616 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 109 | 4178155 | 4178448 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 110 | 3451735 | 3452007 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 111 | 3248737 | 3248997 | - | NZ_CP043727.1 | Yersinia canariae |
| 112 | 1041561 | 1041821 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 113 | 3258223 | 3258483 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 114 | 4267265 | 4267525 | + | NZ_CP009787.1 | Yersinia rohdei |
| 115 | 1469447 | 1469707 | + | NZ_CP046293.1 | Yersinia intermedia |
| 116 | 2656714 | 2656974 | - | NZ_CP032487.1 | Yersinia hibernica |
| 117 | 2277639 | 2277884 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 118 | 2837315 | 2837608 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 119 | 1962065 | 1962310 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 120 | 624368 | 624649 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 121 | 4112431 | 4112724 | + | NZ_CP049115.1 | Pantoea stewartii |
| 122 | 3202124 | 3202384 | - | NZ_LS483422.1 | Providencia heimbachae |
| 123 | 1500429 | 1500722 | + | NZ_LR134531.1 | Pragia fontium |
| 124 | 3058669 | 3058953 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 125 | 233003 | 233296 | - | NZ_CP019706.1 | Pantoea alhagi |
| 126 | 1104561 | 1104842 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 127 | 1361963 | 1362208 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 128 | 631266 | 631559 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 129 | 534164 | 534424 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 130 | 1965904 | 1966164 | + | NZ_CP029736.1 | Providencia rettgeri |
| 131 | 1359470 | 1359763 | + | NZ_CP061511.1 | Mixta calida |
| 132 | 3921239 | 3921520 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 133 | 3307837 | 3308097 | - | NZ_CP048796.1 | Providencia vermicola |
| 134 | 1162954 | 1163247 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 135 | 2946708 | 2947001 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 136 | 2692957 | 2693238 | + | NZ_CP026364.1 | Proteus hauseri |
| 137 | 2897393 | 2897686 | - | NZ_CP038853.1 | Pantoea vagans |
| 138 | 777287 | 777532 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 139 | 1455015 | 1455311 | + | NZ_CP026377.1 | Mixta gaviniae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP043318.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF07676.14 | 0.98 | 135 | 3098.5 | same-strand | WD40-like Beta Propeller Repeat |
| 2 | PF04052.15 | 0.98 | 135 | 3098.5 | same-strand | TolB amino-terminal domain |
| 3 | PF06519.13 | 0.96 | 133 | 1738.0 | same-strand | TolA C-terminal |
| 4 | PF02472.18 | 0.98 | 135 | 1246.0 | same-strand | Biopolymer transport protein ExbD/TolR |
| 5 | PF01618.18 | 1.0 | 138 | 549 | same-strand | MotA/TolQ/ExbB proton channel family |
| 6 | PF03061.24 | 0.89 | 123 | 149.0 | same-strand | Thioesterase superfamily |
| 7 | PF13279.8 | 0.89 | 123 | 149.0 | same-strand | Thioesterase-like superfamily |
| 8 | PF08173.13 | 1.0 | 138 | 0 | same-strand | Membrane bound YbgT-like protein |
| 9 | PF02322.17 | 1.0 | 138 | 130 | same-strand | Cytochrome bd terminal oxidase subunit II |
| 10 | PF01654.19 | 1.0 | 138 | 1284 | same-strand | Cytochrome bd terminal oxidase subunit I |
| 11 | PF00549.21 | 0.74 | 102 | 4371.5 | same-strand | CoA-ligase |
| 12 | PF02629.21 | 0.74 | 102 | 3672.0 | same-strand | CoA binding domain |
| 13 | PF13607.8 | 0.74 | 102 | 3672.0 | same-strand | Succinyl-CoA ligase like flavodoxin domain |
++ More..