Result : P0AAU4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YbfA |
| NCBI Accession ID | AE005674.2 |
| Organism | Shigella flexneri |
| Left | 624101 |
| Right | 624307 |
| Strand | - |
| Nucleotide Sequence | ATGGAACTCTACAGAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACATATGCGGTTGCAGCGGGCGTTCTGGCGCTGCCTTTCATGCTTTTCTGGAAAGACCGCGCCCGCTTTTACAGCTACCTGCACCGCGTCTGGTCGAAAACCAGCGATAAACCGGTGTGGATGGATCAGGCCGAAAAGGCAACCGGTGATTTTTACTGA |
| Sequence | MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKATGDFY |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam10725. Profile Description: Protein of unknown function (DUF2517). This family is conserved in Proteobacteria. Several members are annotated as being protein YbfA. The function is not known. |
| Pubmed ID | 12384590 12704152 |
| Domain | CDD:402386 |
| Functional Category | Others |
| Uniprot ID | P0AAU4 |
| ORF Length (Amino Acid) | 68 |
++ More..
| Conservation Analysis |
No. of Species: 148
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1358846 | 1359052 | + | NZ_LR134340.1 | Escherichia marmotae |
| 2 | 3015729 | 3015935 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 3 | 1456630 | 1456836 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 4 | 624101 | 624307 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 5 | 729134 | 729340 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 6 | 708957 | 709163 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 807562 | 807768 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 8 | 1925362 | 1925568 | - | NZ_CP038469.1 | Citrobacter tructae |
| 9 | 4170233 | 4170439 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 10 | 2938014 | 2938220 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 11 | 859962 | 860168 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 12 | 4250217 | 4250423 | + | NZ_CP033744.1 | Citrobacter freundii |
| 13 | 253316 | 253522 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 14 | 1345995 | 1346201 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 15 | 1338555 | 1338761 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 16 | 1300231 | 1300437 | + | NC_015968.1 | Enterobacter soli |
| 17 | 2175660 | 2175866 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 18 | 524389 | 524595 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 19 | 776195 | 776401 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 20 | 1365754 | 1365960 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 21 | 2277012 | 2277218 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 22 | 1542654 | 1542860 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 23 | 1294606 | 1294812 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 24 | 1216620 | 1216826 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 25 | 3249701 | 3249907 | + | NZ_CP053416.1 | Salmonella bongori |
| 26 | 3866904 | 3867110 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 27 | 774464 | 774670 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 28 | 3247180 | 3247386 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 29 | 3466756 | 3466962 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 30 | 1447461 | 1447667 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 31 | 3172949 | 3173149 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 32 | 2567922 | 2568122 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 33 | 3257615 | 3257821 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 34 | 4134439 | 4134645 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 35 | 3154311 | 3154517 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 36 | 3521903 | 3522109 | - | NZ_CP023525.1 | Cedecea neteri |
| 37 | 1438323 | 1438529 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 38 | 3297952 | 3298158 | - | NZ_LR134201.1 | Cedecea lapagei |
| 39 | 3002965 | 3003171 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 40 | 1621359 | 1621565 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 41 | 4240061 | 4240267 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 42 | 2720809 | 2721015 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 43 | 1546353 | 1546559 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 44 | 1441421 | 1441627 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 45 | 342589 | 342795 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 46 | 3766895 | 3767101 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 47 | 1325129 | 1325335 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 48 | 1369539 | 1369745 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 49 | 2765268 | 2765474 | + | NZ_CP065640.1 | Serratia rubidaea |
| 50 | 2098772 | 2098978 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 51 | 1325252 | 1325458 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 52 | 2815764 | 2815970 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 53 | 1222943 | 1223149 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 54 | 2755813 | 2756025 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 55 | 1503988 | 1504194 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 56 | 3373534 | 3373740 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 57 | 1554420 | 1554626 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 58 | 303472 | 303678 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 59 | 1442702 | 1442908 | + | NZ_CP046293.1 | Yersinia intermedia |
| 60 | 723021 | 723227 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 61 | 1504586 | 1504792 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 62 | 156826 | 157032 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 63 | 3366387 | 3366593 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 64 | 1314491 | 1314691 | + | NZ_CP050150.1 | Hafnia alvei |
| 65 | 3551549 | 3551755 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 66 | 4689509 | 4689715 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 67 | 1340890 | 1341096 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 68 | 1240792 | 1240998 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 69 | 2604448 | 2604654 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 70 | 4151362 | 4151568 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 71 | 1375805 | 1376011 | + | NZ_LT906479.1 | Serratia ficaria |
| 72 | 3527369 | 3527575 | + | NZ_CP011254.1 | Serratia fonticola |
| 73 | 1220574 | 1220780 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 74 | 3340116 | 3340322 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 75 | 4289320 | 4289526 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 76 | 3336242 | 3336448 | + | NZ_CP026047.1 | Raoultella planticola |
| 77 | 1300093 | 1300299 | + | NZ_LR134494.1 | Serratia quinivorans |
| 78 | 599071 | 599271 | + | NZ_CP028271.1 | Mixta intestinalis |
| 79 | 1297516 | 1297683 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 80 | 3658286 | 3658492 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 81 | 3895521 | 3895727 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 82 | 4033535 | 4033741 | - | NZ_CP050508.1 | Raoultella terrigena |
| 83 | 3763457 | 3763666 | - | NZ_CP071320.1 | Serratia ureilytica |
| 84 | 601011 | 601220 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 85 | 1295294 | 1295503 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 86 | 1616991 | 1617197 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 87 | 3914469 | 3914675 | - | NZ_CP054254.1 | Klebsiella variicola |
| 88 | 3331386 | 3331592 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 89 | 1409406 | 1409612 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 90 | 1334828 | 1335028 | + | NZ_CP061511.1 | Mixta calida |
| 91 | 2683428 | 2683634 | - | NZ_CP032487.1 | Yersinia hibernica |
| 92 | 1456838 | 1457044 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 93 | 2187560 | 2187766 | - | NZ_CP067057.1 | Rahnella aceris |
| 94 | 4240231 | 4240437 | + | NZ_CP009787.1 | Yersinia rohdei |
| 95 | 257694 | 257885 | - | NZ_CP019706.1 | Pantoea alhagi |
| 96 | 1430565 | 1430765 | + | NZ_CP026377.1 | Mixta gaviniae |
| 97 | 2923720 | 2923926 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 98 | 3276718 | 3276924 | - | NZ_CP043727.1 | Yersinia canariae |
| 99 | 3696968 | 3697174 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 100 | 3744462 | 3744668 | - | NZ_CP041247.1 | Raoultella electrica |
| 101 | 3534172 | 3534378 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 102 | 3423151 | 3423357 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 103 | 137881 | 138087 | - | NZ_CP007230.1 | Yersinia similis |
| 104 | 3296152 | 3296358 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 105 | 1368448 | 1368654 | + | NZ_CP025799.1 | Dickeya zeae |
| 106 | 4085998 | 4086198 | + | NZ_CP049115.1 | Pantoea stewartii |
| 107 | 1343284 | 1343493 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 108 | 2297073 | 2297282 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 109 | 3078087 | 3078296 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 110 | 3503428 | 3503637 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 111 | 1372108 | 1372314 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 112 | 1429784 | 1429990 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 113 | 1175617 | 1175823 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 114 | 2415126 | 2415326 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 115 | 3006004 | 3006177 | - | NZ_LT615367.1 | Dickeya aquatica |
| 116 | 2971294 | 2971494 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 117 | 1982721 | 1982930 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 118 | 2302109 | 2302309 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 119 | 1228590 | 1228796 | + | NZ_CP065534.1 | Lonsdalea populi |
| 120 | 1221054 | 1221260 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 121 | 1060291 | 1060500 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 122 | 1710811 | 1711020 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 123 | 2857779 | 2857985 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 124 | 2676572 | 2676775 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 125 | 3450872 | 3451081 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 126 | 757940 | 758149 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 127 | 3221457 | 3221663 | - | NZ_LS483422.1 | Providencia heimbachae |
| 128 | 3942085 | 3942291 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 129 | 3329343 | 3329549 | - | NZ_CP048796.1 | Providencia vermicola |
| 130 | 983173 | 983376 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 131 | 2215322 | 2215522 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 132 | 1460967 | 1461167 | + | NZ_LR134531.1 | Pragia fontium |
| 133 | 1946725 | 1946931 | + | NZ_CP029736.1 | Providencia rettgeri |
| 134 | 515102 | 515308 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 135 | 655978 | 656178 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 136 | 2274891 | 2275091 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 137 | 1201011 | 1201211 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 138 | 2775498 | 2775698 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 139 | 1074131 | 1074337 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 140 | 1984311 | 1984511 | - | NZ_CP044060.1 | Aeromonas veronii |
| 141 | 2283008 | 2283208 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 142 | 3414678 | 3414878 | - | NZ_AP022188.1 | Aeromonas media |
| 143 | 3517307 | 3517507 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 144 | 593889 | 594095 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 145 | 2662342 | 2662548 | + | NZ_CP026364.1 | Proteus hauseri |
| 146 | 3326553 | 3326753 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 147 | 3252416 | 3252583 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 148 | 1138440 | 1138640 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 149 | 2921990 | 2922190 | - | NZ_CP038853.1 | Pantoea vagans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP045205.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00072.26 | 0.74 | 110 | 7421 | opposite-strand | Response regulator receiver domain |
| 2 | PF00486.30 | 0.74 | 110 | 7435 | opposite-strand | Transcriptional regulatory protein, C terminal |
| 3 | PF02702.19 | 0.77 | 114 | 4818 | opposite-strand | Osmosensitive K+ channel His kinase sensor domain |
| 4 | PF13493.8 | 0.76 | 113 | 4818.0 | opposite-strand | Domain of unknown function (DUF4118) |
| 5 | PF02518.28 | 0.81 | 120 | 4765 | opposite-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 6 | PF00512.27 | 0.8 | 119 | 4775.0 | opposite-strand | His Kinase A (phospho-acceptor) domain |
| 7 | PF02669.17 | 0.77 | 114 | 4241 | opposite-strand | K+-transporting ATPase, c chain |
| 8 | PF00702.28 | 0.78 | 115 | 2171.0 | opposite-strand | haloacid dehalogenase-like hydrolase |
| 9 | PF00122.22 | 0.79 | 117 | 2159.0 | opposite-strand | E1-E2 ATPase |
| 10 | PF03814.17 | 0.78 | 116 | 443 | opposite-strand | Potassium-transporting ATPase A subunit |
| 11 | PF03441.16 | 0.76 | 112 | 1110.0 | same-strand | FAD binding domain of DNA photolyase |
| 12 | PF00875.20 | 0.76 | 112 | 1110.0 | same-strand | DNA photolyase |
| 13 | PF02682.18 | 0.63 | 93 | 3502 | same-strand | Carboxyltransferase domain, subdomain C and D |
| 14 | PF01784.20 | 0.81 | 120 | 2595.5 | same-strand | NIF3 (NGG1p interacting factor 3) |
++ More..