Result : P0A423
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Photosystem I reaction center subunit IV (Photosystem I 8.1 kDa protein) (p30 protein) |
| NCBI Accession ID | BA000039.2 |
| Organism | Thermosynechococcus elongatus (strain BP-1) |
| Left | 1633464 |
| Right | 1633694 |
| Strand | - |
| Nucleotide Sequence | ATGGTGCAACGTGGTTCTAAAGTCAAGATTCTCCGCCCTGAATCCTACTGGTACAACGAAGTGGGCACTGTTGCCTCTGTGGATCAAACTCCCGGCGTCAAATATCCTGTGATTGTGCGCTTTGACAAAGTCAATTACACGGGCTATAGCGGCAGTGCCAGCGGTGTGAACACAAATAACTTTGCGCTTCACGAAGTGCAAGAAGTGGCTCCCCCCAAAAAAGGTAAATAG |
| Sequence | MVQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEVAPPKKGK |
| Source of smORF | Swiss-Prot |
| Function | Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase. {ECO:0000250}. |
| Pubmed ID | 12240834 8901876 10066799 11418848 |
| Domain | CDD:413752 |
| Functional Category | Others |
| Uniprot ID | P0A423 |
| ORF Length (Amino Acid) | 76 |
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| Conservation Analysis |
No. of Species: 25
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1511011 | 1511241 | - | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 2 | 1633464 | 1633694 | - | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 3 | 1249266 | 1249493 | - | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 4 | 1476788 | 1477030 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 5 | 292809 | 293036 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 6 | 5665033 | 5665272 | - | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 7 | 5424214 | 5424456 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 8 | 2900976 | 2901209 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 9 | 679193 | 679393 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 10 | 4669982 | 4670215 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 11 | 2912548 | 2912757 | - | NC_019675.1 | Cyanobium gracile PCC 6307 |
| 12 | 2850364 | 2850579 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 13 | 4126732 | 4126947 | + | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 14 | 5461446 | 5461661 | + | NZ_CP031941.1 | Nostoc sphaeroides |
| 15 | 2897184 | 2897399 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 16 | 4952264 | 4952479 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 17 | 359478 | 359687 | - | NC_005042.1 | Prochlorococcus marinus subsp. marinus str. CCMP1375 |
| 18 | 6619976 | 6620203 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 19 | 1840377 | 1840595 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 20 | 907444 | 907650 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 21 | 3499789 | 3500004 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 22 | 514597 | 514860 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 23 | 3608674 | 3608871 | - | NC_005125.1 | Gloeobacter violaceus PCC 7421 |
| 24 | 1125983 | 1126222 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 25 | 724292 | 724489 | + | NC_022600.1 | Gloeobacter kilaueensis JS1 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP018202.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01149.26 | 0.96 | 24 | 74.0 | same-strand | Formamidopyrimidine-DNA glycosylase N-terminal domain |
| 2 | PF06831.16 | 0.96 | 24 | 74.0 | same-strand | Formamidopyrimidine-DNA glycosylase H2TH domain |
| 3 | PF06827.16 | 0.92 | 23 | 104 | same-strand | Zinc finger found in FPG and IleRS |
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