Protein Information |
Information Type | Description |
---|---|
Protein name | Photosystem I reaction center subunit IV (Photosystem I 8.1 kDa protein) (p30 protein) |
NCBI Accession ID | BA000039.2 |
Organism | Thermosynechococcus elongatus (strain BP-1) |
Left | 1633464 |
Right | 1633694 |
Strand | - |
Nucleotide Sequence | ATGGTGCAACGTGGTTCTAAAGTCAAGATTCTCCGCCCTGAATCCTACTGGTACAACGAAGTGGGCACTGTTGCCTCTGTGGATCAAACTCCCGGCGTCAAATATCCTGTGATTGTGCGCTTTGACAAAGTCAATTACACGGGCTATAGCGGCAGTGCCAGCGGTGTGAACACAAATAACTTTGCGCTTCACGAAGTGCAAGAAGTGGCTCCCCCCAAAAAAGGTAAATAG |
Sequence | MVQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEVAPPKKGK |
Source of smORF | Swiss-Prot |
Function | Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase. {ECO:0000250}. |
Pubmed ID | 12240834 8901876 10066799 11418848 |
Domain | CDD:413752 |
Functional Category | Others |
Uniprot ID | P0A423 |
ORF Length (Amino Acid) | 76 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1511011 | 1511241 | - | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
2 | 1633464 | 1633694 | - | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
3 | 1249266 | 1249493 | - | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
4 | 1476788 | 1477030 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
5 | 292809 | 293036 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
6 | 5665033 | 5665272 | - | NC_011729.1 | Gloeothece citriformis PCC 7424 |
7 | 5424214 | 5424456 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
8 | 2900976 | 2901209 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
9 | 679193 | 679393 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
10 | 4669982 | 4670215 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
11 | 2912548 | 2912757 | - | NC_019675.1 | Cyanobium gracile PCC 6307 |
12 | 2850364 | 2850579 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
13 | 4126732 | 4126947 | + | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
14 | 5461446 | 5461661 | + | NZ_CP031941.1 | Nostoc sphaeroides |
15 | 2897184 | 2897399 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
16 | 4952264 | 4952479 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
17 | 359478 | 359687 | - | NC_005042.1 | Prochlorococcus marinus subsp. marinus str. CCMP1375 |
18 | 6619976 | 6620203 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
19 | 1840377 | 1840595 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
20 | 907444 | 907650 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
21 | 3499789 | 3500004 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
22 | 514597 | 514860 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
23 | 3608674 | 3608871 | - | NC_005125.1 | Gloeobacter violaceus PCC 7421 |
24 | 1125983 | 1126222 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
25 | 724292 | 724489 | + | NC_022600.1 | Gloeobacter kilaueensis JS1 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01149.26 | 0.96 | 24 | 74.0 | same-strand | Formamidopyrimidine-DNA glycosylase N-terminal domain |
2 | PF06831.16 | 0.96 | 24 | 74.0 | same-strand | Formamidopyrimidine-DNA glycosylase H2TH domain |
3 | PF06827.16 | 0.92 | 23 | 104 | same-strand | Zinc finger found in FPG and IleRS |