Result : P0A1M2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Surface presentation of antigens protein SpaQ |
| NCBI Accession ID | U29346.1 |
| Organism | Salmonella senftenberg |
| Left | 1602 |
| Right | 1862 |
| Strand | + |
| Nucleotide Sequence | ATGGATGATTTAGTGTTTGCAGGTAATAAGGCGCTCTATCTTGTTTTGATCCTGTCAGGGTGGCCGACGATTGTCGCAACGATTATCGGCCTCCTGGTAGGGTTATTCCAGACGGTAACGCAATTACAGGAACAGACGCTGCCTTTTGGCATTAAATTACTTGGCGTGTGTTTGTGCTTGTTTTTACTCTCTGGCTGGTATGGCGAAGTTTTACTCTCTTACGGGCGTCAGGTGATATTCCTGGCGTTGGCTAAGGGGTAA |
| Sequence | MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVIFLALAKG |
| Source of smORF | Swiss-Prot |
| Function | Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells. |
| Pubmed ID | 7638176 |
| Domain | CDD:412617 |
| Functional Category | Others |
| Uniprot ID | P0A1M2 |
| ORF Length (Amino Acid) | 86 |
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| Conservation Analysis |
No. of Species: 43
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3033392 | 3033652 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 853514 | 853774 | - | NZ_CP053416.1 | Salmonella bongori |
| 3 | 4240013 | 4240273 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 4 | 2831168 | 2831428 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 5 | 4624262 | 4624522 | - | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 6 | 4981353 | 4981613 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 7 | 3895157 | 3895411 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 8 | 1938280 | 1938534 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 9 | 4124379 | 4124639 | + | NZ_CP011254.1 | Serratia fonticola |
| 10 | 2922200 | 2922460 | - | NZ_AP014857.1 | Escherichia albertii |
| 11 | 3724861 | 3725121 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 12 | 664053 | 664313 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 13 | 3649491 | 3649745 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 14 | 5069327 | 5069581 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 15 | 179083 | 179346 | + | NC_023018.2 | Pandoraea pnomenusa |
| 16 | 133360 | 133620 | + | NC_004851.1 | Shigella flexneri 2a str. 301 |
| 17 | 222699 | 222920 | + | NZ_CP010897.2 | Pandoraea vervacti |
| 18 | 185898 | 186119 | + | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 19 | 1795356 | 1795610 | - | NZ_CP009793.1 | Burkholderia dolosa AU0158 |
| 20 | 198270 | 198533 | + | NZ_LT906435.1 | Pandoraea sputorum |
| 21 | 2145290 | 2145544 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 22 | 169220 | 169483 | + | NZ_CP011253.3 | Pandoraea oxalativorans |
| 23 | 3459629 | 3459841 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 24 | 2939621 | 2939830 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 25 | 3942582 | 3942851 | - | NZ_CP032487.1 | Yersinia hibernica |
| 26 | 3846738 | 3847007 | - | NZ_CP043727.1 | Yersinia canariae |
| 27 | 169372 | 169644 | + | NZ_CP048796.1 | Providencia vermicola |
| 28 | 1955903 | 1956172 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 29 | 3058612 | 3058875 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 30 | 856399 | 856671 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 31 | 1084940 | 1085158 | - | NZ_CP026364.1 | Proteus hauseri |
| 32 | 229535 | 229807 | + | NZ_LS483422.1 | Providencia heimbachae |
| 33 | 1117388 | 1117642 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 34 | 4414394 | 4414648 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 35 | 3998832 | 3999104 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 36 | 622909 | 623181 | - | NZ_CP029736.1 | Providencia rettgeri |
| 37 | 591827 | 592081 | + | NZ_CP008782.1 | Burkholderia pseudomallei |
| 38 | 1415521 | 1415775 | - | NZ_CP009728.1 | Burkholderia mallei |
| 39 | 1677327 | 1677593 | + | NZ_CP046570.1 | Xanthomonas albilineans |
| 40 | 1356896 | 1357150 | + | NZ_CP009556.1 | Burkholderia oklahomensis C6786 |
| 41 | 978402 | 978656 | + | NC_007650.1 | Burkholderia thailandensis E264 |
| 42 | 134303 | 134512 | - | NC_017311.1 | Desulfovibrio vulgaris RCH1 |
| 43 | 668897 | 669106 | + | NC_020127.1 | Lawsonia intracellularis N343 |
| 44 | 4646233 | 4646499 | - | NZ_CP016171.1 | Bordetella bronchialis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04888.14 | 0.79 | 34 | 2565.5 | same-strand | Secretion system effector C (SseC) like family |
| 2 | PF07720.14 | 0.79 | 34 | 2028 | same-strand | Tetratricopeptide repeat |
| 3 | PF01312.21 | 0.98 | 42 | 788 | same-strand | FlhB HrpN YscU SpaS Family |
| 4 | PF01311.22 | 0.98 | 42 | 4 | same-strand | Bacterial export proteins, family 1 |
| 5 | PF00813.22 | 0.95 | 41 | 14.5 | same-strand | FliP family |
| 6 | PF01052.22 | 0.95 | 41 | 688.5 | same-strand | Type III flagellar switch regulator (C-ring) FliN C-term |
| 7 | PF00006.27 | 0.91 | 39 | 3172.0 | same-strand | ATP synthase alpha/beta family, nucleotide-binding domain |
| 8 | PF18269.3 | 0.91 | 39 | 3172.0 | same-strand | T3SS EscN ATPase C-terminal domain |
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