Result : P08874
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Transition state regulatory protein AbrB |
| NCBI Accession ID | X12820.1 |
| Organism | Bacillus subtilis (strain 168) |
| Left | 183 |
| Right | 473 |
| Strand | + |
| Nucleotide Sequence | ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTACTCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGCGCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA |
| Sequence | MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK |
| Source of smORF | Swiss-Prot |
| Function | Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA promoter region at two A- and T-rich sites, it may be the sole repressor of tycA transcription. {ECO:0000269|Pubmed:2504584}. |
| Pubmed ID | 3145384 2554317 7584024 9384377 2504584 1908787 15101989 |
| Domain | CDD:408090,CDD:412624 |
| Functional Category | DNA-binding |
| Uniprot ID | P08874 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 151
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 44549 | 44839 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 2 | 1521409 | 1521687 | + | NZ_CP051464.1 | Bacillus mojavensis |
| 3 | 25106 | 25396 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 4 | 1489390 | 1489650 | + | NZ_CP013984.1 | Bacillus inaquosorum |
| 5 | 1964584 | 1964874 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 6 | 467432 | 467710 | - | NZ_CP029364.1 | Bacillus halotolerans |
| 7 | 44848 | 45138 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 8 | 1517883 | 1518143 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 9 | 44524 | 44808 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 10 | 1423191 | 1423451 | + | NZ_CP048852.1 | Bacillus tequilensis |
| 11 | 44535 | 44819 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 12 | 1482964 | 1483242 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 13 | 180684 | 180968 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 14 | 1694797 | 1695057 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 15 | 3885304 | 3885588 | + | NZ_CP011937.1 | Bacillus velezensis |
| 16 | 2537264 | 2537548 | - | NZ_CP011937.1 | Bacillus velezensis |
| 17 | 45960 | 46244 | - | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 18 | 1421074 | 1421358 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 19 | 50703 | 50996 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 20 | 3879935 | 3880219 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 21 | 1637152 | 1637439 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 22 | 1584527 | 1584817 | + | NZ_CP017786.1 | Bacillus xiamenensis |
| 23 | 279588 | 279866 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 24 | 23710 | 24000 | - | NZ_CP011150.1 | Bacillus altitudinis |
| 25 | 1417303 | 1417581 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 26 | 1501476 | 1501766 | + | NZ_CP043404.1 | Bacillus safensis |
| 27 | 116206 | 116484 | - | NZ_CP043404.1 | Bacillus safensis |
| 28 | 49313 | 49603 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 29 | 1623161 | 1623448 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 30 | 3473976 | 3474260 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 31 | 75933 | 76223 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 32 | 1647102 | 1647389 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
| 33 | 3665527 | 3665808 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 34 | 4145672 | 4145908 | + | NZ_CP016020.1 | Bacillus weihaiensis |
| 35 | 53912 | 54145 | - | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 36 | 156083 | 156367 | - | NZ_CP053989.1 | Niallia circulans |
| 37 | 4804899 | 4805189 | + | NZ_CP053989.1 | Niallia circulans |
| 38 | 1074970 | 1075218 | - | NZ_CP017703.1 | Aeribacillus pallidus |
| 39 | 2047584 | 2047868 | + | NZ_CP022983.1 | Cytobacillus kochii |
| 40 | 843509 | 843799 | + | NZ_CP022983.1 | Cytobacillus kochii |
| 41 | 41048 | 41332 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
| 42 | 1947575 | 1947853 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 43 | 4641935 | 4642216 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 44 | 4785486 | 4785764 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 45 | 46770 | 47054 | - | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 46 | 47822 | 48106 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 47 | 1920595 | 1920837 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 48 | 3003912 | 3004187 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 49 | 40446 | 40730 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 50 | 2370137 | 2370379 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 51 | 1939105 | 1939392 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 52 | 1850147 | 1850428 | + | NZ_CP041305.1 | Cytobacillus ciccensis |
| 53 | 40736 | 41020 | - | NC_011725.1 | Bacillus cereus B4264 |
| 54 | 2517604 | 2517882 | + | NC_011725.1 | Bacillus cereus B4264 |
| 55 | 1915027 | 1915314 | + | NC_011725.1 | Bacillus cereus B4264 |
| 56 | 5078878 | 5079117 | + | NZ_CP040336.1 | Bacillus luti |
| 57 | 3196261 | 3196548 | - | NZ_CP040336.1 | Bacillus luti |
| 58 | 39816 | 40100 | - | NZ_CP012152.1 | Anoxybacillus gonensis |
| 59 | 40823 | 41107 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 60 | 1882201 | 1882488 | + | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 61 | 2484648 | 2484932 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 62 | 1227665 | 1227949 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 63 | 42070 | 42351 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 64 | 2174510 | 2174752 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 65 | 2985780 | 2986058 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 66 | 40431 | 40715 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 67 | 1945269 | 1945556 | + | NZ_CP032365.1 | Bacillus wiedmannii |
| 68 | 3232960 | 3233244 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 69 | 32700 | 32957 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 70 | 2433340 | 2433612 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 71 | 2787512 | 2787748 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 72 | 1635259 | 1635543 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 73 | 44636 | 44911 | - | NZ_CP031223.1 | Psychrobacillus glaciei |
| 74 | 2528847 | 2529131 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 75 | 3924918 | 3925202 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 76 | 44522 | 44806 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 77 | 40988 | 41221 | - | NZ_CP016540.2 | Planococcus versutus |
| 78 | 2511795 | 2512067 | - | NZ_CP016540.2 | Planococcus versutus |
| 79 | 47589 | 47822 | - | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 80 | 3175745 | 3176029 | - | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 81 | 1620262 | 1620537 | - | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 82 | 46336 | 46569 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 83 | 45001 | 45285 | - | NZ_CP016538.2 | Planococcus maritimus |
| 84 | 2997170 | 2997457 | + | NZ_CP016538.2 | Planococcus maritimus |
| 85 | 44907 | 45191 | - | NZ_CP059540.1 | Planococcus maritimus |
| 86 | 1617382 | 1617663 | - | NZ_CP059540.1 | Planococcus maritimus |
| 87 | 2994452 | 2994739 | + | NZ_CP059540.1 | Planococcus maritimus |
| 88 | 1715329 | 1715562 | + | NZ_CP013661.2 | Planococcus kocurii |
| 89 | 47308 | 47541 | - | NZ_CP019401.1 | Planococcus faecalis |
| 90 | 45073 | 45366 | - | NZ_CP012024.1 | Bacillus smithii |
| 91 | 571897 | 572199 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 92 | 67279 | 67512 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 93 | 3237849 | 3238121 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 94 | 4654281 | 4654514 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 95 | 53748 | 54026 | - | NZ_CP029797.1 | Paraliobacillus zengyii |
| 96 | 2911927 | 2912196 | - | NZ_CP029797.1 | Paraliobacillus zengyii |
| 97 | 4787569 | 4787847 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 98 | 4513533 | 4513808 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 99 | 4161018 | 4161287 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 100 | 55508 | 55786 | - | NZ_CP041666.1 | Radiobacillus deserti |
| 101 | 2861200 | 2861442 | + | NZ_CP041666.1 | Radiobacillus deserti |
| 102 | 66693 | 66971 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 103 | 40237 | 40515 | - | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 104 | 144612 | 144896 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 105 | 439958 | 440257 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 106 | 1803988 | 1804263 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 107 | 41350 | 41637 | - | NZ_LS483476.1 | Lederbergia lentus |
| 108 | 52992 | 53276 | - | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 109 | 146939 | 147217 | + | NZ_CP020772.1 | Halobacillus mangrovi |
| 110 | 3186505 | 3186798 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 111 | 43902 | 44186 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 112 | 42957 | 43256 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 113 | 2736564 | 2736863 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 114 | 2352999 | 2353298 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 115 | 229614 | 229913 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 116 | 907178 | 907459 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 117 | 2654468 | 2654713 | + | NZ_CP011361.2 | Salimicrobium jeotgali |
| 118 | 54658 | 54933 | - | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 119 | 47530 | 47820 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 120 | 1524655 | 1524942 | - | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 121 | 3533478 | 3533765 | + | NZ_CP012502.1 | Bacillus beveridgei |
| 122 | 1637590 | 1637877 | - | NZ_CP012502.1 | Bacillus beveridgei |
| 123 | 4639907 | 4640185 | + | NZ_CP014616.1 | Sporosarcina psychrophila |
| 124 | 185069 | 185347 | + | NZ_CP017560.1 | Sporosarcina ureilytica |
| 125 | 47273 | 47569 | - | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 126 | 65879 | 66169 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 127 | 4121573 | 4121863 | + | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 128 | 3845176 | 3845454 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 129 | 2742993 | 2743271 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 130 | 2386928 | 2387203 | + | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 131 | 1471151 | 1471429 | + | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 132 | 2337902 | 2338174 | + | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 133 | 2339548 | 2339823 | - | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 134 | 2309711 | 2309986 | + | NZ_CP054482.1 | Macrococcus bohemicus |
| 135 | 44806 | 45081 | - | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 136 | 263406 | 263684 | + | NZ_CP022437.1 | Virgibacillus necropolis |
| 137 | 54367 | 54651 | - | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 138 | 2632889 | 2633167 | + | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 139 | 2296368 | 2296655 | + | NZ_CP047361.1 | Macrococcus canis |
| 140 | 1157668 | 1157946 | + | NZ_CP022315.1 | Virgibacillus phasianinus |
| 141 | 2711129 | 2711404 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 142 | 1691246 | 1691533 | + | NZ_CP065729.1 | Macrococcus caseolyticus |
| 143 | 39670 | 39954 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 144 | 2173477 | 2173773 | + | NZ_CP035485.1 | Salicibibacter halophilus |
| 145 | 2263166 | 2263462 | - | NZ_CP031092.1 | Salicibibacter kimchii |
| 146 | 41482 | 41757 | - | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 147 | 38004 | 38282 | - | NZ_CP068052.1 | Peribacillus psychrosaccharolyticus |
| 148 | 1010646 | 1010936 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 149 | 1664363 | 1664644 | + | NZ_CP019573.1 | Abyssicoccus albus |
| 150 | 148704 | 148988 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 151 | 209392 | 209676 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 152 | 121660 | 121947 | - | NZ_LR134483.1 | Listeria grayi |
| 153 | 3067268 | 3067552 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 154 | 86397 | 86669 | + | NC_013793.1 | Alkalihalobacillus pseudofirmus OF4 |
| 155 | 166687 | 166971 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 156 | 148528 | 148812 | - | NZ_LT906444.1 | Listeria welshimeri |
| 157 | 114576 | 114866 | + | NZ_CP022984.1 | Cytobacillus kochii |
| 158 | 28723 | 29004 | - | NZ_CP022984.1 | Cytobacillus kochii |
| 159 | 113089 | 113349 | - | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 160 | 3117725 | 3117979 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 161 | 3080 | 3355 | - | NZ_CP059541.1 | Planococcus maritimus |
| 162 | 32221 | 32496 | - | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 163 | 3187544 | 3187795 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 164 | 2895376 | 2895636 | + | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 165 | 2205507 | 2205776 | - | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 166 | 2330815 | 2331069 | + | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 167 | 2727707 | 2727952 | - | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 168 | 3754405 | 3754656 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 169 | 39302 | 39553 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 170 | 2113060 | 2113314 | + | NZ_CP009428.1 | Paenibacillus odorifer |
| 171 | 2305425 | 2305676 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 172 | 5629589 | 5629840 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 173 | 1626012 | 1626263 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 174 | 990937 | 991188 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 175 | 28037 | 28288 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 176 | 27261 | 27512 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 177 | 2634035 | 2634289 | + | NZ_CP009285.1 | Paenibacillus borealis |
| 178 | 904994 | 905248 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 179 | 3893578 | 3893814 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 180 | 3813514 | 3813765 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 181 | 4545860 | 4546120 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 182 | 7088629 | 7088880 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 183 | 1203208 | 1203462 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 184 | 27056 | 27307 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 185 | 688241 | 688492 | - | NZ_CP013023.1 | Paenibacillus bovis |
| 186 | 4044053 | 4044313 | - | NZ_CP013023.1 | Paenibacillus bovis |
| 187 | 35964 | 36206 | - | NZ_CP019699.1 | Novibacillus thermophilus |
| 188 | 4486356 | 4486607 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 189 | 30578 | 30829 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 190 | 2103951 | 2104208 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 191 | 27134 | 27385 | - | NZ_CP009288.1 | Paenibacillus durus |
| 192 | 2074321 | 2074581 | + | NZ_CP009288.1 | Paenibacillus durus |
| 193 | 4269436 | 4269687 | - | NZ_CP033433.1 | Cohnella candidum |
| 194 | 46498 | 46749 | - | NZ_AP019400.1 | Cohnella abietis |
| 195 | 1939310 | 1939561 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 196 | 4415443 | 4415697 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 197 | 26782 | 27033 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 198 | 2498833 | 2499087 | + | NZ_CP009287.1 | Paenibacillus graminis |
| 199 | 1899162 | 1899413 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 200 | 4589348 | 4589602 | + | NZ_CP068595.1 | Paenibacillus sonchi |
| 201 | 26916 | 27167 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 202 | 2797490 | 2797744 | + | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 203 | 3592936 | 3593187 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 204 | 1520864 | 1521115 | + | NZ_CP011388.1 | Paenibacillus swuensis |
| 205 | 2298364 | 2298615 | - | NZ_CP011058.1 | Paenibacillus beijingensis |
| 206 | 814893 | 815144 | - | NZ_CP034437.1 | Paenibacillus albus |
| 207 | 4153784 | 4154035 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 208 | 8471300 | 8471551 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 209 | 3960131 | 3960382 | + | NC_019897.1 | Thermobacillus composti KWC4 |
| 210 | 3046543 | 3046797 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 211 | 3395465 | 3395749 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 212 | 5305975 | 5306226 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 213 | 166488 | 166730 | - | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 214 | 1917638 | 1917880 | + | NZ_LR590481.1 | Hathewaya histolytica |
| 215 | 142525 | 142767 | - | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 216 | 50223 | 50468 | - | NC_014378.1 | Acetohalobium arabaticum DSM 5501 |
| 217 | 5377872 | 5378129 | + | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 218 | 1274812 | 1275069 | - | NZ_CP048000.1 | Anaerocolumna sedimenticola |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013984.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06156.15 | 0.91 | 137 | 2000.5 | opposite-strand | Initiation control protein YabA |
| 2 | PF00590.22 | 0.95 | 144 | 74 | opposite-strand | Tetrapyrrole (Corrin/Porphyrin) Methylases |
| 3 | PF01588.22 | 0.73 | 110 | 475 | opposite-strand | Putative tRNA binding domain |
| 4 | PF01026.23 | 0.93 | 140 | 2525 | opposite-strand | TatD related DNase |
| 5 | PF03990.16 | 0.75 | 114 | 3458 | opposite-strand | G5-linked-Ubiquitin-like domain |
| 6 | PF06725.13 | 0.76 | 115 | 3457.5 | opposite-strand | 3D domain |
| 7 | PF07501.14 | 0.76 | 115 | 3459.0 | opposite-strand | G5 domain |
| 8 | PF13331.8 | 0.85 | 128 | 4819 | opposite-strand | Domain of unknown function (DUF4093) |
| 9 | PF01751.24 | 0.68 | 102 | 4877 | opposite-strand | Toprim domain |
| 10 | PF00398.22 | 0.82 | 124 | 5369 | opposite-strand | Ribosomal RNA adenine dimethylase |
| 11 | PF04468.14 | 0.91 | 138 | 2378 | opposite-strand | PSP1 C-terminal conserved region |
++ More..