Result : P05650
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Probable ribosome maturation protein RlbA |
| NCBI Accession ID | X02369.1 |
| Organism | Bacillus subtilis (strain 168) |
| Left | 3982 |
| Right | 4197 |
| Strand | + |
| Nucleotide Sequence | ATGGCAAATCCGATTTCAATTGATACAGAGATGATTACACTCGGACAATTCTTAAAATTAGCCGATGTGATTCAGTCTGGCGGTATGGCGAAGTGGTTTTTAAGCGAGCATGAAGTGCTTGTGAACGATGAGCCGGACAACCGCCGGGGCAGAAAGCTGTATGTTGGAGATGTGGTAGAGATTGAAGGATTTGGTTCATTTCAAGTCGTCAATTAA |
| Sequence | MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVNDEPDNRRGRKLYVGDVVEIEGFGSFQVVN |
| Source of smORF | Swiss-Prot |
| Function | May assist in the assembly of the 50S subunit. {ECO:0000269|Pubmed:24637032}. |
| Pubmed ID | 2987847 7584024 9384377 24637032 |
| Domain | CDD:415814 |
| Functional Category | RNA-binding |
| Uniprot ID | P05650 |
| ORF Length (Amino Acid) | 71 |
++ More..
| Conservation Analysis |
No. of Species: 326
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3206 | 3421 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 2 | 138934 | 139149 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 3 | 3003 | 3218 | + | NZ_CP051464.1 | Bacillus mojavensis |
| 4 | 2797 | 3012 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 5 | 2006199 | 2006414 | - | NZ_CP029364.1 | Bacillus halotolerans |
| 6 | 4122709 | 4122924 | + | NZ_CP013984.1 | Bacillus inaquosorum |
| 7 | 2799 | 3014 | + | NZ_CP048852.1 | Bacillus tequilensis |
| 8 | 3928122 | 3928337 | - | NZ_CP011937.1 | Bacillus velezensis |
| 9 | 3207 | 3422 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 10 | 3328 | 3543 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 11 | 29956 | 30171 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
| 12 | 2809 | 3024 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 13 | 1641664 | 1641879 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 14 | 1546023 | 1546238 | - | NZ_CP043404.1 | Bacillus safensis |
| 15 | 2825 | 3040 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 16 | 4598411 | 4598602 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 17 | 4190565 | 4190780 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 18 | 2209439 | 2209657 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 19 | 2276720 | 2276935 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 20 | 2644 | 2859 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 21 | 1176717 | 1176890 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 22 | 1892331 | 1892543 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 23 | 2836 | 3051 | + | NZ_LS483476.1 | Lederbergia lentus |
| 24 | 1030827 | 1031042 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 25 | 2087128 | 2087346 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 26 | 3386 | 3607 | + | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 27 | 3398 | 3619 | - | NZ_CP011361.2 | Salimicrobium jeotgali |
| 28 | 2768 | 2983 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 29 | 2445462 | 2445674 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 30 | 3199 | 3411 | + | NC_011725.1 | Bacillus cereus B4264 |
| 31 | 2868 | 3077 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 32 | 3462 | 3674 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 33 | 3193 | 3405 | + | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 34 | 2787 | 2999 | + | NZ_CP032365.1 | Bacillus wiedmannii |
| 35 | 2567988 | 2568200 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 36 | 2807 | 3001 | + | NZ_CP016543.2 | Planococcus donghaensis |
| 37 | 5116530 | 5116742 | - | NZ_CP040336.1 | Bacillus luti |
| 38 | 182999 | 183217 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 39 | 3313 | 3525 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 40 | 2793 | 3005 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 41 | 3482 | 3703 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 42 | 3227705 | 3227920 | - | NZ_CP035492.1 | Paenibacillus protaetiae |
| 43 | 792657 | 792872 | + | NZ_CP034437.1 | Paenibacillus albus |
| 44 | 199496 | 199717 | - | NZ_CP020772.1 | Halobacillus mangrovi |
| 45 | 109102 | 109314 | + | NZ_CP053989.1 | Niallia circulans |
| 46 | 2784 | 2963 | + | NZ_AP019400.1 | Cohnella abietis |
| 47 | 2807 | 3001 | + | NZ_CP016537.2 | Planococcus halocryophilus |
| 48 | 3615571 | 3615786 | - | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 49 | 543733 | 543948 | - | NZ_CP026363.1 | Brevibacillus agri |
| 50 | 2144379 | 2144597 | + | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 51 | 1760095 | 1760286 | - | NZ_CP013661.2 | Planococcus kocurii |
| 52 | 3094 | 3312 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 53 | 4246189 | 4246404 | + | NZ_CP033433.1 | Cohnella candidum |
| 54 | 2796 | 2999 | + | NZ_CP019401.1 | Planococcus faecalis |
| 55 | 4218135 | 4218350 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 56 | 2806 | 3000 | + | NZ_CP016540.2 | Planococcus versutus |
| 57 | 2659 | 2898 | + | NZ_CP059540.1 | Planococcus maritimus |
| 58 | 2758 | 2997 | + | NZ_CP016538.2 | Planococcus maritimus |
| 59 | 2804 | 2998 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 60 | 3190633 | 3190872 | + | NZ_CP013659.2 | Planococcus rifietoensis |
| 61 | 2807 | 2998 | + | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 62 | 2737 | 2949 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 63 | 2742 | 2957 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 64 | 3985715 | 3985936 | - | NC_019897.1 | Thermobacillus composti KWC4 |
| 65 | 5330460 | 5330681 | - | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 66 | 2857 | 3063 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 67 | 21918 | 22142 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 68 | 2745 | 2960 | + | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 69 | 3799600 | 3799782 | + | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 70 | 3260 | 3487 | + | NZ_CP053421.1 | Pediococcus acidilactici |
| 71 | 189971 | 190189 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 72 | 2748 | 2963 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 73 | 3491 | 3715 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 74 | 3202 | 3426 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 75 | 75737 | 75961 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 76 | 3186 | 3407 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 77 | 2751 | 2978 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 78 | 2885 | 3103 | + | NZ_CP041666.1 | Radiobacillus deserti |
| 79 | 2947 | 3168 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 80 | 2696949 | 2697170 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 81 | 268739 | 268960 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 82 | 2393205 | 2393426 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 83 | 5374861 | 5375085 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 84 | 1844994 | 1845239 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 85 | 3460 | 3693 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 86 | 2879705 | 2879938 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 87 | 3133237 | 3133458 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 88 | 1525753 | 1525980 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 89 | 480432 | 480653 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 90 | 3077 | 3295 | + | NZ_CP012024.1 | Bacillus smithii |
| 91 | 5648 | 5866 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 92 | 1447502 | 1447723 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 93 | 2281293 | 2281511 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 94 | 4277008 | 4277217 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 95 | 1861595 | 1861786 | - | NZ_CP015108.1 | Sporosarcina ureae |
| 96 | 4366 | 4584 | + | NZ_LR134483.1 | Listeria grayi |
| 97 | 248745 | 248987 | + | NZ_CP016843.1 | Carnobacterium divergens |
| 98 | 1121 | 1351 | - | NZ_CP023434.1 | Suicoccus acidiformans |
| 99 | 3283 | 3504 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 100 | 231957 | 232196 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 101 | 2790342 | 2790581 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 102 | 3115 | 3345 | + | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 103 | 3050 | 3265 | + | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 104 | 458754 | 458933 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 105 | 3182 | 3412 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 106 | 611509 | 611730 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 107 | 3788398 | 3788616 | + | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 108 | 2949 | 3125 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 109 | 2876 | 3094 | + | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 110 | 1575 | 1805 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 111 | 1601586 | 1601804 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 112 | 763299 | 763526 | + | NZ_CP046037.1 | Latilactobacillus sakei |
| 113 | 5653830 | 5654048 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 114 | 1197491 | 1197718 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 115 | 1075165 | 1075404 | - | NZ_CP049887.1 | Vagococcus hydrophili |
| 116 | 1592080 | 1592310 | - | NZ_CP017326.1 | Weissella soli |
| 117 | 3319 | 3540 | + | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 118 | 302262 | 302483 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 119 | 4177751 | 4177966 | - | NZ_CP014167.1 | Paenibacillus yonginensis |
| 120 | 1293821 | 1294069 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 121 | 312029 | 312247 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 122 | 2951 | 3190 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 123 | 1051359 | 1051607 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 124 | 971530 | 971748 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 125 | 3829 | 4029 | + | NZ_CP017267.1 | Vagococcus teuberi |
| 126 | 3227332 | 3227553 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 127 | 28499 | 28738 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 128 | 959424 | 959654 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 129 | 3219 | 3440 | + | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 130 | 2650 | 2865 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 131 | 1024266 | 1024496 | + | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 132 | 1238847 | 1239026 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 133 | 1948454 | 1948684 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 134 | 1042169 | 1042399 | - | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 135 | 1541939 | 1542154 | - | NZ_CP011388.1 | Paenibacillus swuensis |
| 136 | 2928 | 3155 | + | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 137 | 2939 | 3133 | + | NZ_CP065211.1 | Enterococcus lactis |
| 138 | 1552244 | 1552462 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 139 | 37676 | 37855 | - | NZ_CP022657.1 | Tumebacillus algifaecis |
| 140 | 744848 | 745027 | + | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 141 | 3188 | 3415 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 142 | 86147 | 86365 | - | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 143 | 1570408 | 1570614 | + | NZ_CP021434.1 | Tumebacillus avium |
| 144 | 3740 | 3964 | + | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 145 | 1644672 | 1644905 | - | NZ_CP023501.1 | Weissella paramesenteroides |
| 146 | 2949 | 3167 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 147 | 1026862 | 1027080 | - | NZ_CP053187.1 | Turicibacter sanguinis |
| 148 | 661201 | 661395 | - | NZ_CP023011.2 | Enterococcus hirae |
| 149 | 3212374 | 3212589 | - | NZ_CP016809.1 | Paenibacillus ihbetae |
| 150 | 2901 | 3128 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 151 | 3298 | 3519 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 152 | 154025 | 154219 | - | NZ_CP060720.1 | Vagococcus carniphilus |
| 153 | 1195099 | 1195341 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 154 | 2892 | 3134 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 155 | 3744 | 3959 | + | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 156 | 3429 | 3650 | + | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 157 | 2860 | 3102 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 158 | 1019930 | 1020145 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 159 | 1779902 | 1780111 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 160 | 350357 | 350587 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 161 | 1089440 | 1089619 | - | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 162 | 664167 | 664385 | + | NZ_CP013023.1 | Paenibacillus bovis |
| 163 | 2547159 | 2547380 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 164 | 3278 | 3457 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 165 | 3067439 | 3067633 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 166 | 2649736 | 2649945 | - | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 167 | 616436 | 616645 | + | NZ_CP019323.1 | Companilactobacillus allii |
| 168 | 2259729 | 2259938 | - | NZ_CP017996.1 | Companilactobacillus crustorum |
| 169 | 233659 | 233838 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 170 | 2867 | 3091 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 171 | 930580 | 930819 | - | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 172 | 2827 | 3000 | + | NZ_CP014324.1 | Oenococcus oeni |
| 173 | 2903 | 3109 | + | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 174 | 1581968 | 1582156 | - | NZ_CP037940.1 | Weissella cryptocerci |
| 175 | 2810 | 3049 | + | NZ_CP012047.1 | Tetragenococcus halophilus |
| 176 | 3778630 | 3778848 | - | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 177 | 888817 | 888993 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 178 | 1028569 | 1028811 | - | NZ_CP014163.1 | Aerococcus urinaehominis |
| 179 | 1740320 | 1740541 | + | NZ_CP065729.1 | Macrococcus caseolyticus |
| 180 | 6331 | 6552 | + | NZ_CP047361.1 | Macrococcus canis |
| 181 | 2887 | 3066 | + | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 182 | 2201989 | 2202198 | + | NZ_CP049366.1 | Companilactobacillus pabuli |
| 183 | 64268 | 64477 | + | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 184 | 2910 | 3119 | + | NZ_CP040736.1 | Companilactobacillus futsaii |
| 185 | 2178046 | 2178264 | + | NZ_CP031092.1 | Salicibibacter kimchii |
| 186 | 2794 | 3021 | + | NZ_CP009288.1 | Paenibacillus durus |
| 187 | 6222 | 6464 | + | NZ_AP022822.1 | Enterococcus saigonensis |
| 188 | 2848 | 3057 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 189 | 1305183 | 1305404 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 190 | 2938 | 3153 | + | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 191 | 38246 | 38461 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 192 | 2823 | 3050 | + | NZ_CP009428.1 | Paenibacillus odorifer |
| 193 | 2230449 | 2230670 | - | NZ_CP008876.1 | Terribacillus goriensis |
| 194 | 2710595 | 2710801 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 195 | 2229385 | 2229606 | - | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 196 | 703092 | 703313 | - | NZ_CP029684.2 | Oenococcus sicerae |
| 197 | 3068 | 3307 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 198 | 4737227 | 4737427 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 199 | 277245 | 277454 | + | NZ_CP024610.1 | Lactobacillus terrae |
| 200 | 1914886 | 1915113 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 201 | 2823 | 3050 | + | NZ_CP009287.1 | Paenibacillus graminis |
| 202 | 2855 | 3076 | + | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 203 | 1873065 | 1873292 | + | NZ_CP068595.1 | Paenibacillus sonchi |
| 204 | 2503186 | 2503407 | + | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 205 | 2813 | 2995 | + | NZ_CP034118.1 | Staphylospora marina |
| 206 | 853037 | 853252 | - | NZ_CP018906.1 | Lentilactobacillus curieae |
| 207 | 2264178 | 2264396 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 208 | 5508097 | 5508294 | - | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 209 | 2927 | 3142 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 210 | 7064727 | 7064954 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 211 | 1963814 | 1964038 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 212 | 608676 | 608897 | + | NZ_CP027770.1 | Staphylococcus felis |
| 213 | 5530007 | 5530189 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 214 | 2736 | 2963 | + | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 215 | 2927 | 3151 | + | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 216 | 2790 | 3017 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 217 | 2820 | 3047 | + | NZ_CP009285.1 | Paenibacillus borealis |
| 218 | 1193285 | 1193500 | - | NZ_LR134484.1 | Gemella haemolysans |
| 219 | 3707 | 3931 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 220 | 6759 | 6980 | + | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 221 | 2923 | 3144 | + | NZ_CP045530.1 | Limosilactobacillus pontis |
| 222 | 2613402 | 2613623 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 223 | 2904 | 3128 | + | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 224 | 1987268 | 1987471 | - | NZ_AP019711.1 | Amedibacterium intestinale |
| 225 | 1086640 | 1086855 | + | NZ_CP046314.1 | Gemella morbillorum |
| 226 | 2916 | 3134 | + | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 227 | 2818485 | 2818709 | - | NZ_CP013114.1 | Staphylococcus equorum |
| 228 | 3487594 | 3487821 | + | NC_020304.1 | Desulfocapsa sulfexigens DSM 10523 |
| 229 | 206091 | 206300 | + | NZ_CP033460.1 | Staphylococcus debuckii |
| 230 | 5175 | 5351 | + | NC_014334.2 | Lacticaseibacillus paracasei |
| 231 | 2931 | 3155 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 232 | 3662 | 3838 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 233 | 1727069 | 1727263 | + | NZ_CP019573.1 | Abyssicoccus albus |
| 234 | 3305 | 3529 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 235 | 2034 | 2240 | + | NC_014632.1 | Ilyobacter polytropus DSM 2926 |
| 236 | 121907 | 122110 | + | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 237 | 3249 | 3458 | + | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 238 | 3909 | 4133 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 239 | 2348935 | 2349171 | - | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 240 | 3046 | 3252 | + | NC_014393.1 | Clostridium cellulovorans 743B |
| 241 | 160328 | 160543 | - | NZ_CP018809.1 | Lactobacillus jensenii |
| 242 | 3060 | 3266 | + | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 243 | 4021107 | 4021313 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 244 | 226286 | 226468 | + | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 245 | 3008 | 3232 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 246 | 1623629 | 1623847 | - | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 247 | 199108 | 199320 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 248 | 6467976 | 6468194 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 249 | 2900 | 3115 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 250 | 2745130 | 2745354 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 251 | 2131923 | 2132159 | - | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 252 | 3231 | 3467 | + | NZ_CP035288.1 | Staphylococcus epidermidis |
| 253 | 1156576 | 1156815 | - | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 254 | 135970 | 136182 | - | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 255 | 4060117 | 4060323 | - | NZ_CP019870.1 | Clostridioides difficile |
| 256 | 907520 | 907756 | - | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 257 | 2959288 | 2959497 | - | NZ_CP049257.1 | Nocardioides anomalus |
| 258 | 2812 | 3018 | + | NZ_CP014150.1 | Paeniclostridium sordellii |
| 259 | 735390 | 735602 | - | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 260 | 142497 | 142685 | - | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 261 | 838590 | 838811 | + | NZ_LR134352.1 | Nocardia asteroides |
| 262 | 2982936 | 2983151 | + | NZ_CP016379.1 | Anoxybacter fermentans |
| 263 | 81604 | 81795 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 264 | 186713 | 186946 | + | NZ_CP015961.1 | Dietzia timorensis |
| 265 | 6929227 | 6929448 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 266 | 4685164 | 4685367 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 267 | 2596 | 2808 | + | NZ_LR134524.1 | Peptoniphilus harei |
| 268 | 49293 | 49502 | - | NZ_CP030280.1 | Blautia argi |
| 269 | 4192972 | 4193199 | - | NZ_CP047180.1 | Rathayibacter festucae |
| 270 | 376341 | 376553 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 271 | 91268 | 91474 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 272 | 2846 | 3049 | + | NZ_CP011391.1 | Faecalibaculum rodentium |
| 273 | 1244075 | 1244254 | - | NC_014666.1 | Frankia inefficax |
| 274 | 1539254 | 1539463 | - | NZ_CP031513.1 | Bombilactobacillus bombi |
| 275 | 2709 | 2924 | + | NZ_LR215023.1 | Mycoplasma iowae |
| 276 | 5460299 | 5460508 | - | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 277 | 3492667 | 3492849 | + | NZ_CP031425.1 | Microbacterium foliorum |
| 278 | 4946093 | 4946302 | - | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 279 | 110430 | 110651 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 280 | 495065 | 495262 | - | NC_002939.5 | Geobacter sulfurreducens PCA |
| 281 | 2889 | 3107 | + | NC_014654.1 | Halanaerobium hydrogeniformans |
| 282 | 1786649 | 1786858 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 283 | 122523 | 122720 | - | NC_007517.1 | Geobacter metallireducens GS-15 |
| 284 | 1160054 | 1160263 | - | NZ_CP059694.1 | Gordonia rubripertincta |
| 285 | 1603447 | 1603674 | - | NZ_CP044231.1 | Microbacterium caowuchunii |
| 286 | 2775 | 2984 | + | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 287 | 98138 | 98359 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 288 | 277400 | 277618 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 289 | 278526 | 278744 | - | NZ_CP008953.1 | Amycolatopsis japonica |
| 290 | 9210503 | 9210706 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 291 | 6171538 | 6171717 | - | NC_013739.1 | Conexibacter woesei DSM 14684 |
| 292 | 69876 | 70094 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 293 | 478814 | 479023 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 294 | 869447 | 869656 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 295 | 406005 | 406214 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 296 | 3213774 | 3213980 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 297 | 43105 | 43278 | - | NZ_CP009761.1 | Parvimonas micra |
| 298 | 3738461 | 3738643 | + | NZ_CP031422.1 | Microbacterium oxydans |
| 299 | 708939 | 709160 | + | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 300 | 1171439 | 1171636 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 301 | 2598 | 2774 | + | NZ_AP019827.1 | Leptotrichia shahii |
| 302 | 5171591 | 5171794 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 303 | 1780230 | 1780436 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 304 | 2590 | 2769 | + | NZ_AP019829.2 | Leptotrichia wadei |
| 305 | 655778 | 655990 | + | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 306 | 882031 | 882231 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 307 | 2830604 | 2830813 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 308 | 2732 | 2959 | + | NC_013192.1 | Leptotrichia buccalis C-1013-b |
| 309 | 1358193 | 1358399 | - | NZ_CP028105.1 | Fusobacterium ulcerans |
| 310 | 319961 | 320188 | + | NZ_CP049255.1 | Microbacterium endophyticum |
| 311 | 1027495 | 1027701 | - | NZ_CP028103.1 | Fusobacterium varium ATCC 27725 |
| 312 | 2598 | 2777 | + | NZ_AP019845.1 | Leptotrichia trevisanii |
| 313 | 1561603 | 1561818 | - | NC_011661.1 | Dictyoglomus turgidum DSM 6724 |
| 314 | 2931559 | 2931753 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 315 | 3820459 | 3820635 | + | NZ_CP033972.1 | Gordonia insulae |
| 316 | 1377231 | 1377446 | - | NC_011297.1 | Dictyoglomus thermophilum H-6-12 |
| 317 | 16805 | 17017 | + | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 318 | 2596765 | 2596989 | - | NZ_CP028130.1 | Rathayibacter iranicus |
| 319 | 2603424 | 2603651 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 320 | 1372491 | 1372688 | - | NC_011979.1 | Geobacter daltonii FRC-32 |
| 321 | 3016504 | 3016707 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 322 | 4602726 | 4602941 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 323 | 2085414 | 2085623 | + | NZ_CP070062.1 | Coprococcus comes |
| 324 | 1434352 | 1434561 | - | NZ_LT990039.1 | Massilistercora timonensis |
| 325 | 1704469 | 1704681 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 326 | 1711789 | 1711998 | - | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 327 | 490129 | 490326 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00308.20 | 0.75 | 243 | 1506.5 | same-strand | Bacterial dnaA protein |
| 2 | PF08299.13 | 0.75 | 243 | 1501.5 | same-strand | Bacterial dnaA protein helix-turn-helix |
| 3 | PF11638.10 | 0.69 | 224 | 1494.0 | same-strand | DnaA N-terminal domain |
| 4 | PF00004.31 | 0.7 | 227 | 1501.5 | same-strand | ATPase family associated with various cellular activities (AAA) |
| 5 | PF00712.21 | 0.76 | 248 | 193 | same-strand | DNA polymerase III beta subunit, N-terminal domain |
| 6 | PF02767.18 | 0.76 | 248 | 186 | same-strand | DNA polymerase III beta subunit, central domain |
| 7 | PF02768.17 | 0.76 | 248 | 186 | same-strand | DNA polymerase III beta subunit, C-terminal domain |
| 8 | PF02463.21 | 0.79 | 258 | 9.0 | same-strand | RecF/RecN/SMC N terminal domain |
| 9 | PF00204.27 | 0.79 | 256 | 1183 | same-strand | DNA gyrase B |
| 10 | PF00986.23 | 0.79 | 256 | 1183 | same-strand | DNA gyrase B subunit, carboxyl terminus |
| 11 | PF02518.28 | 0.79 | 258 | 1183.0 | same-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 12 | PF01751.24 | 0.79 | 256 | 1183 | same-strand | Toprim domain |
| 13 | PF00521.22 | 0.76 | 247 | 3208.5 | same-strand | DNA gyrase/topoisomerase IV, subunit A |
| 14 | PF03989.15 | 0.76 | 247 | 3208.5 | same-strand | DNA gyrase C-terminal domain, beta-propeller |
++ More..