Result : P02338
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protamine-like protein |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1287087 |
| Right | 1287176 |
| Strand | - |
| Nucleotide Sequence | ATGAGAAGCTTCGACCAAGGTTCGACTCGAGCGCCAGCGAGAGAGCGTTGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCTGA |
| Sequence | MRSFDQGSTRAPARERCRRQRPEGRSAQR |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of PRK14757. Profile Description: putative protamine-like protein; Provisional |
| Pubmed ID | 7034960 7034959 8905232 9278503 16738553 |
| Domain | CDD:173218 |
| Functional Category | Others |
| Uniprot ID | P02338 |
| ORF Length (Amino Acid) | 29 |
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| Conservation Analysis |
No. of Species: 9
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1287087 | 1287176 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 423657 | 423746 | + | NZ_CP033744.1 | Citrobacter freundii |
| 3 | 5027465 | 5027554 | + | NZ_CP026047.1 | Raoultella planticola |
| 4 | 1785429 | 1785503 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 5 | 1785252 | 1785326 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 6 | 2462804 | 2462878 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 7 | 2370809 | 2370883 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 8 | 2370531 | 2370605 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 9 | 2409064 | 2409138 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 10 | 1014290 | 1014364 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 11 | 2242566 | 2242640 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13247.8 | 0.67 | 6 | 1953 | opposite-strand | 4Fe-4S dicluster domain |
| 2 | PF14711.8 | 0.67 | 6 | 1953 | opposite-strand | Respiratory nitrate reductase beta C-terminal |
| 3 | PF13237.8 | 0.67 | 6 | 1953 | opposite-strand | 4Fe-4S dicluster domain |
| 4 | PF12838.9 | 0.67 | 6 | 1953 | opposite-strand | 4Fe-4S dicluster domain |
| 5 | PF02613.17 | 0.67 | 6 | 2283 | opposite-strand | Nitrate reductase delta subunit |
| 6 | PF02665.16 | 1.0 | 9 | 850 | opposite-strand | Nitrate reductase gamma subunit |
| 7 | PF00551.21 | 1.0 | 9 | 582 | same-strand | Formyl transferase |
| 8 | PF01842.27 | 1.0 | 9 | 582 | same-strand | ACT domain |
| 9 | PF17775.3 | 1.0 | 9 | 1477 | same-strand | UPF0225 domain |
| 10 | PF02810.17 | 1.0 | 9 | 1477 | same-strand | SEC-C motif |
| 11 | PF01734.24 | 0.67 | 6 | 1829.0 | opposite-strand | Patatin-like phospholipase |
| 12 | PF00072.26 | 1.0 | 9 | 2751 | opposite-strand | Response regulator receiver domain |
| 13 | PF00483.25 | 0.89 | 8 | 3834.0 | opposite-strand | Nucleotidyl transferase |
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