Result : O87387
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Sarcosine oxidase subunit delta (Sarcosine oxidase subunit D) (EC 1.5.3.1) |
| NCBI Accession ID | AF055582.1 |
| Organism | Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) |
| Left | 175 |
| Right | 453 |
| Strand | - |
| Nucleotide Sequence | ATGGCAAGCCTCGTGCCCTGCCCGAATTGCGGGCGAAGACCCAAGGAAGAATTCACGATCAAGGGCGCGGCCCTGTCGCGACCGGAGGCCGACGCGGATTCGATCGATTGGTTCGACTACGTCTACCTGCGCGAGAACCCGCGCGGCGCCTACGAGGAATACTGGCACCACACGTCCGGGTGCCGCCGCTGGCTCGTCGTTGCCCGGGACACCGTGACGCATGAGATTGCAGCGTGCTGCGATGCGGCCGGCCGCGCTCGATCGGAGGCGCGCAAATGA |
| Sequence | MASLVPCPNCGRRPKEEFTIKGAALSRPEADADSIDWFDYVYLRENPRGAYEEYWHHTSGCRRWLVVARDTVTHEIAACCDAAGRARSEARK |
| Source of smORF | Swiss-Prot |
| Function | Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10-methylenetetrahydrofolate. |
| Pubmed ID | 11481430 11474104 |
| Domain | CDD:413053 |
| Functional Category | Others |
| Uniprot ID | O87387 |
| ORF Length (Amino Acid) | 92 |
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| Conservation Analysis |
No. of Species: 50
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 100868 | 101146 | - | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 2 | 700682 | 700960 | - | NZ_CP034910.1 | Ensifer alkalisoli |
| 3 | 1942762 | 1943037 | + | NZ_CP006880.1 | Rhizobium gallicum bv. gallicum R602sp |
| 4 | 5057562 | 5057837 | - | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 5 | 6045616 | 6045891 | - | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 6 | 2709697 | 2709975 | + | NZ_CP010803.1 | Martelella endophytica |
| 7 | 567914 | 568192 | - | NZ_CP029452.1 | Sinorhizobium fredii CCBAU 25509 |
| 8 | 214893 | 215156 | + | NZ_CP071609.1 | Rhizobium binae |
| 9 | 240809 | 241072 | - | NZ_CP012661.1 | Defluviimonas alba |
| 10 | 2005566 | 2005844 | + | NC_020062.1 | Rhizobium tropici CIAT 899 |
| 11 | 611727 | 612008 | + | NZ_CP071680.1 | Rhizobium ruizarguesonis |
| 12 | 190004 | 190285 | + | NZ_CP054023.1 | Rhizobium indicum |
| 13 | 705038 | 705319 | - | NZ_CP035001.1 | Rhizobium acidisoli |
| 14 | 366327 | 366608 | + | NZ_CP013534.1 | Rhizobium phaseoli |
| 15 | 109042 | 109323 | - | NZ_CP071456.1 | Rhizobium lentis |
| 16 | 242088 | 242369 | + | NZ_CP054029.1 | Rhizobium hidalgonense |
| 17 | 153912 | 154190 | - | NZ_CP032695.1 | Rhizobium jaguaris |
| 18 | 463737 | 464018 | + | NZ_CP013503.1 | Rhizobium esperanzae |
| 19 | 2795909 | 2796184 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 20 | 430936 | 431217 | + | NZ_CP071614.1 | Rhizobium bangladeshense |
| 21 | 446379 | 446651 | + | NZ_CP017942.1 | Phyllobacterium zundukense |
| 22 | 1114377 | 1114655 | - | NZ_CP013110.1 | Sinorhizobium americanum |
| 23 | 469193 | 469474 | + | NZ_CP020909.1 | Rhizobium etli |
| 24 | 1720970 | 1721248 | + | NZ_CP031555.1 | Thalassospira indica |
| 25 | 3282549 | 3282827 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 26 | 2145317 | 2145604 | + | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 27 | 2807460 | 2807741 | - | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 28 | 3364412 | 3364690 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 29 | 2730640 | 2730918 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 30 | 2517390 | 2517674 | - | NZ_CP043043.1 | Gluconobacter thailandicus |
| 31 | 3370559 | 3370786 | + | NZ_CP019875.1 | Komagataeibacter nataicola |
| 32 | 28678 | 28941 | + | NZ_CP033222.1 | Parasedimentitalea marina |
| 33 | 2525244 | 2525513 | - | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 34 | 1671843 | 1672124 | + | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 35 | 3110362 | 3110628 | + | NZ_CP020470.1 | Rhodobacter blasticus |
| 36 | 831720 | 831983 | + | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 37 | 709044 | 709313 | + | NZ_CP041159.1 | Leisingera aquaemixtae |
| 38 | 1697577 | 1697852 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 39 | 1636441 | 1636695 | - | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 40 | 2410092 | 2410367 | - | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 41 | 2461208 | 2461480 | - | NZ_CP034348.1 | Roseovarius faecimaris |
| 42 | 6774745 | 6775008 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 43 | 1697496 | 1697762 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 44 | 1356852 | 1357088 | - | NZ_CP041241.1 | Ensifer mexicanus |
| 45 | 482326 | 482610 | - | NC_014217.1 | Starkeya novella DSM 506 |
| 46 | 3252957 | 3253208 | + | NZ_CP006644.1 | Sphingomonas sanxanigenens DSM 19645 = NX02 |
| 47 | 3267888 | 3268151 | - | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 48 | 4788526 | 4788801 | - | NZ_CP050296.1 | Mesorhizobium huakuii |
| 49 | 5203787 | 5204062 | + | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 50 | 5939541 | 5939816 | + | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 51 | 1709282 | 1709557 | - | NZ_CP017147.1 | Bosea vaviloviae |
| 52 | 3281753 | 3282019 | + | NZ_CP025086.1 | Methylovirgula ligni |
| 53 | 3224896 | 3225165 | + | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 54 | 1907312 | 1907584 | - | NZ_CP015093.1 | Salipiger abyssi |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_020528.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01571.23 | 1.0 | 50 | -3 | same-strand | Aminomethyltransferase folate-binding domain |
| 2 | PF13510.8 | 1.0 | 50 | -3.0 | same-strand | 2Fe-2S iron-sulfur cluster binding domain |
| 3 | PF17806.3 | 0.98 | 49 | -3 | same-strand | Sarcosine oxidase A3 domain |
| 4 | PF08669.13 | 0.98 | 49 | -3.0 | same-strand | Glycine cleavage T-protein C-terminal barrel domain |
| 5 | PF01266.26 | 1.0 | 50 | 17.0 | same-strand | FAD dependent oxidoreductase |
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