* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007899.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00886.21
|
1.0
|
9
|
2785
|
same-strand
|
Ribosomal protein S16
|
2
|
PF01746.23
|
1.0
|
9
|
1704
|
same-strand
|
tRNA (Guanine-1)-methyltransferase
|
3
|
PF01245.22
|
1.0
|
9
|
1314
|
same-strand
|
Ribosomal protein L19
|
4
|
PF01351.20
|
1.0
|
9
|
608
|
same-strand
|
Ribonuclease HII
|
5
|
PF00625.23
|
1.0
|
9
|
-3
|
same-strand
|
Guanylate kinase
|
6
|
PF13238.8
|
0.78
|
7
|
-3
|
same-strand
|
AAA domain
|
7
|
PF09334.13
|
1.0
|
9
|
0
|
same-strand
|
tRNA synthetases class I (M)
|
8
|
PF13604.8
|
1.0
|
9
|
1691
|
opposite-strand
|
AAA domain
|
9
|
PF13245.8
|
1.0
|
9
|
1691
|
opposite-strand
|
AAA domain
|
10
|
PF14490.8
|
1.0
|
9
|
1691
|
opposite-strand
|
Helix-hairpin-helix containing domain
|
11
|
PF18335.3
|
1.0
|
9
|
1691
|
opposite-strand
|
ATP-dependent RecD-like DNA helicase SH3 domain
|
12
|
PF13538.8
|
1.0
|
9
|
1691
|
opposite-strand
|
UvrD-like helicase C-terminal domain
|
13
|
PF00892.22
|
0.89
|
8
|
4316.0
|
opposite-strand
|
EamA-like transporter family
|
14
|
PF19303.1
|
0.67
|
6
|
0.0
|
same-strand
|
Anticodon binding domain of methionyl tRNA ligase
|
15
|
PF14520.8
|
0.67
|
6
|
1666.5
|
opposite-strand
|
Helix-hairpin-helix domain
|
++ More..