Result : A3QDZ8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L25 |
| NCBI Accession ID | CP000606.1 |
| Organism | Shewanella loihica (strain ATCC BAA-1088 / PV-4) |
| Left | 2105880 |
| Right | 2106167 |
| Strand | + |
| Nucleotide Sequence | ATGTCTTACACAATTACCGCACAAACCCGCACTGAAATTGGGAAAGGTTCGAGCCGCCGCCTACGTCATGCTGGTAAAGTTCCTGCAGTTATCTATGGTGCGGGCAAAGAAGCCGTTTCTATCGAATTCGAACACCGTTCAATCATCAACATCCAAACTAACGATGATTTCTACAACAGCGACATCACTATCGTTCTAGACGGTAAAGAAGTTAAAGTTCGTGTTCAAGCTATGCAACGTCACGCGTTCAAGCCTATGATCGAGCACGTGGATTTCAAATTCGCTTAA |
| Sequence | MSYTITAQTRTEIGKGSSRRLRHAGKVPAVIYGAGKEAVSIEFEHRSIINIQTNDDFYNSDITIVLDGKEVKVRVQAMQRHAFKPMIEHVDFKFA |
| Source of smORF | Swiss-Prot |
| Function | This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. {ECO:0000255|HAMAP-Rule:MF_01336}. |
| Pubmed ID | |
| Domain | CDD:412568 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A3QDZ8 |
| ORF Length (Amino Acid) | 95 |
++ More..
| Conservation Analysis |
No. of Species: 244
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2105880 | 2106167 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 2 | 2333862 | 2334149 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 3 | 2699223 | 2699510 | - | NZ_CP046378.1 | Shewanella algae |
| 4 | 1460566 | 1460853 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 5 | 2584639 | 2584926 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 6 | 2827100 | 2827387 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 7 | 2383547 | 2383834 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 8 | 2936316 | 2936603 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 9 | 4165996 | 4166283 | + | NZ_CP036200.1 | Shewanella maritima |
| 10 | 2973771 | 2974058 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 11 | 2308388 | 2308675 | + | NC_016901.1 | Shewanella baltica OS678 |
| 12 | 1973022 | 1973309 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 13 | 1719245 | 1719532 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 14 | 2846563 | 2846850 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 15 | 2202144 | 2202431 | - | NZ_CP037951.1 | Parashewanella tropica |
| 16 | 3259852 | 3260139 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 17 | 2843169 | 2843456 | - | NZ_CP041036.1 | Shewanella polaris |
| 18 | 1847037 | 1847324 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 19 | 660670 | 660957 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 20 | 3164700 | 3164987 | - | NZ_CP020472.1 | Shewanella japonica |
| 21 | 2171728 | 2172015 | + | NC_014012.1 | Shewanella violacea DSS12 |
| 22 | 2647302 | 2647589 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 23 | 1742231 | 1742518 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 24 | 1399877 | 1400164 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 25 | 2835958 | 2836245 | - | NZ_LS483250.1 | Moritella yayanosii |
| 26 | 3722886 | 3723173 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 27 | 1600253 | 1600540 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 28 | 801128 | 801415 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 29 | 2840819 | 2841103 | + | NZ_CP015581.1 | Tatumella citrea |
| 30 | 1266520 | 1266807 | + | NZ_LR134167.1 | Avibacterium volantium |
| 31 | 1703151 | 1703438 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 32 | 143806 | 144093 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 33 | 2993409 | 2993693 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 34 | 2869387 | 2869671 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 35 | 1416315 | 1416599 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 36 | 4522218 | 4522502 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 37 | 2330583 | 2330867 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 38 | 2373768 | 2374052 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 39 | 1782491 | 1782775 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 40 | 2464964 | 2465248 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 41 | 3177189 | 3177473 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 42 | 625867 | 626154 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 43 | 212825 | 213112 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 44 | 246877 | 247161 | - | NZ_CP038469.1 | Citrobacter tructae |
| 45 | 3405583 | 3405867 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 46 | 742417 | 742704 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 47 | 1101834 | 1102121 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 48 | 1432825 | 1433109 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 49 | 569915 | 570199 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 50 | 1441090 | 1441377 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 51 | 531631 | 531915 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 52 | 1252697 | 1252981 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 53 | 2896814 | 2897098 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 54 | 1057134 | 1057418 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 55 | 321508 | 321792 | + | NZ_CP053416.1 | Salmonella bongori |
| 56 | 1887584 | 1887868 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 57 | 4642895 | 4643179 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 58 | 4795628 | 4795912 | + | NZ_CP065640.1 | Serratia rubidaea |
| 59 | 1831489 | 1831773 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 60 | 4063531 | 4063815 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 61 | 1005406 | 1005690 | + | NZ_CP033744.1 | Citrobacter freundii |
| 62 | 2436240 | 2436524 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 63 | 1589945 | 1590232 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 64 | 965122 | 965409 | - | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 65 | 3921400 | 3921684 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 66 | 3519589 | 3519873 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 67 | 850040 | 850324 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 68 | 1256867 | 1257151 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 69 | 2368323 | 2368610 | + | NZ_AP022188.1 | Aeromonas media |
| 70 | 1264415 | 1264702 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 71 | 1587261 | 1587545 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 72 | 2326432 | 2326716 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 73 | 1288781 | 1289068 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 74 | 2928576 | 2928860 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 75 | 1859373 | 1859660 | - | NZ_CP015029.1 | Frederiksenia canicola |
| 76 | 1753856 | 1754143 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 77 | 1339750 | 1340034 | - | NZ_LS483470.1 | Leminorella richardii |
| 78 | 1305583 | 1305870 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 79 | 818994 | 819278 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 80 | 2826685 | 2826969 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 81 | 1378222 | 1378506 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 82 | 1127471 | 1127758 | + | NZ_CP018804.1 | Histophilus somni |
| 83 | 1571475 | 1571762 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 84 | 1898317 | 1898604 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 85 | 1384209 | 1384493 | - | NZ_LR134201.1 | Cedecea lapagei |
| 86 | 1580783 | 1581067 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 87 | 1421302 | 1421586 | - | NZ_CP023525.1 | Cedecea neteri |
| 88 | 4701630 | 4701914 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 89 | 308604 | 308888 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 90 | 3624176 | 3624460 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 91 | 2498714 | 2498998 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 92 | 1790609 | 1790890 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 93 | 2606767 | 2607051 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 94 | 2978086 | 2978370 | - | NZ_CP019706.1 | Pantoea alhagi |
| 95 | 1529008 | 1529295 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 96 | 2122633 | 2122917 | + | NZ_CP028271.1 | Mixta intestinalis |
| 97 | 1592515 | 1592799 | - | NZ_CP054254.1 | Klebsiella variicola |
| 98 | 2406082 | 2406369 | + | NZ_CP028897.1 | Dongshaea marina |
| 99 | 3709034 | 3709318 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 100 | 1556759 | 1557043 | - | NZ_CP071320.1 | Serratia ureilytica |
| 101 | 1281620 | 1281904 | + | NZ_CP049115.1 | Pantoea stewartii |
| 102 | 2175005 | 2175289 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 103 | 1587125 | 1587409 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 104 | 1502781 | 1503065 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 105 | 3017582 | 3017866 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 106 | 1422257 | 1422544 | - | NZ_CP016180.1 | Pasteurella skyensis |
| 107 | 1542075 | 1542359 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 108 | 1696101 | 1696388 | + | NZ_CP040449.1 | Aeromonas simiae |
| 109 | 1904200 | 1904487 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 110 | 1624108 | 1624395 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 111 | 1670064 | 1670345 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 112 | 2829180 | 2829464 | + | NZ_LR134340.1 | Escherichia marmotae |
| 113 | 658373 | 658660 | - | NC_011852.1 | Glaesserella parasuis SH0165 |
| 114 | 1569674 | 1569958 | - | NZ_CP041247.1 | Raoultella electrica |
| 115 | 1656861 | 1657145 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 116 | 3569460 | 3569744 | + | NZ_LT906479.1 | Serratia ficaria |
| 117 | 2772599 | 2772883 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 118 | 2305720 | 2306004 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 119 | 2282517 | 2282801 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 120 | 779367 | 779651 | - | NZ_CP009056.1 | Frischella perrara |
| 121 | 5659867 | 5660151 | + | NZ_CP011254.1 | Serratia fonticola |
| 122 | 1120657 | 1120944 | + | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 123 | 1005092 | 1005379 | + | NZ_CP016604.1 | Otariodibacter oris |
| 124 | 2231463 | 2231750 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 125 | 3611812 | 3612096 | + | NZ_LR134494.1 | Serratia quinivorans |
| 126 | 1752630 | 1752914 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 127 | 2710704 | 2710982 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 128 | 2012877 | 2013155 | + | NC_011753.2 | Vibrio atlanticus |
| 129 | 1398838 | 1399125 | + | NZ_CP046531.1 | Mannheimia ovis |
| 130 | 105993 | 106277 | + | NZ_CP026047.1 | Raoultella planticola |
| 131 | 3530439 | 3530723 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 132 | 575407 | 575694 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 133 | 4777948 | 4778232 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 134 | 3425247 | 3425531 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 135 | 1506321 | 1506575 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 136 | 852448 | 852729 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 137 | 2685984 | 2686265 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 138 | 3311680 | 3311934 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 139 | 3112618 | 3112902 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 140 | 1729452 | 1729739 | - | NZ_CP061280.1 | Mannheimia bovis |
| 141 | 3173261 | 3173515 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 142 | 1205499 | 1205786 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 143 | 4190103 | 4190390 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 144 | 2049715 | 2049993 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 145 | 806977 | 807261 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 146 | 1264085 | 1264366 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 147 | 1692314 | 1692601 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 148 | 2886631 | 2886915 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 149 | 1963802 | 1964056 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 150 | 1148866 | 1149150 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 151 | 1688255 | 1688539 | - | NZ_CP043727.1 | Yersinia canariae |
| 152 | 2962738 | 2963022 | + | NZ_CP046293.1 | Yersinia intermedia |
| 153 | 3165706 | 3165960 | + | NC_015968.1 | Enterobacter soli |
| 154 | 3015453 | 3015737 | + | NZ_CP026377.1 | Mixta gaviniae |
| 155 | 2690493 | 2690777 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 156 | 1375209 | 1375493 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 157 | 2853707 | 2853991 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 158 | 1268508 | 1268792 | + | NZ_CP009787.1 | Yersinia rohdei |
| 159 | 3002033 | 3002317 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 160 | 3248181 | 3248465 | - | NZ_CP007230.1 | Yersinia similis |
| 161 | 3204742 | 3204996 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 162 | 3156628 | 3156882 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 163 | 4081703 | 4081957 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 164 | 3477476 | 3477730 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 165 | 521803 | 522087 | + | NZ_CP007445.1 | Gilliamella apicola |
| 166 | 1642236 | 1642520 | - | NZ_CP050508.1 | Raoultella terrigena |
| 167 | 2456034 | 2456288 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 168 | 1317855 | 1318139 | - | NZ_CP038853.1 | Pantoea vagans |
| 169 | 2363112 | 2363399 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 170 | 1580364 | 1580648 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 171 | 2181724 | 2182014 | + | NZ_CP065534.1 | Lonsdalea populi |
| 172 | 4163378 | 4163662 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 173 | 311361 | 311615 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 174 | 1170016 | 1170300 | - | NZ_CP032487.1 | Yersinia hibernica |
| 175 | 3371876 | 3372160 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 176 | 969774 | 970061 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 177 | 924112 | 924399 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 178 | 1318285 | 1318569 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 179 | 2847285 | 2847566 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 180 | 2288536 | 2288820 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 181 | 943079 | 943333 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 182 | 1991715 | 1991993 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 183 | 4713414 | 4713698 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 184 | 2992022 | 2992306 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 185 | 2070119 | 2070403 | + | NZ_CP028926.1 | Pasteurella multocida |
| 186 | 3435713 | 3436003 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 187 | 1937103 | 1937387 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 188 | 736783 | 737067 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 189 | 2089319 | 2089603 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 190 | 3682964 | 3683248 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 191 | 2451934 | 2452221 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 192 | 2001922 | 2002206 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 193 | 3249106 | 3249390 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 194 | 1982239 | 1982517 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 195 | 3533730 | 3534014 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 196 | 2886480 | 2886764 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 197 | 2877290 | 2877574 | + | NZ_CP061511.1 | Mixta calida |
| 198 | 2414027 | 2414305 | + | NC_013456.1 | Vibrio antiquarius |
| 199 | 2197857 | 2198141 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 200 | 2888031 | 2888315 | + | NZ_CP050150.1 | Hafnia alvei |
| 201 | 2678861 | 2679142 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 202 | 1260198 | 1260476 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 203 | 2497094 | 2497372 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 204 | 1601559 | 1601837 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 205 | 2002493 | 2002777 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 206 | 1640712 | 1640990 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 207 | 1528348 | 1528632 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 208 | 1274624 | 1274902 | - | NZ_CP030788.1 | Vibrio campbellii |
| 209 | 238084 | 238374 | - | NZ_CP067057.1 | Rahnella aceris |
| 210 | 1273255 | 1273533 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 211 | 808631 | 808909 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 212 | 1256551 | 1256829 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 213 | 947460 | 947738 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 214 | 1849661 | 1849939 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 215 | 1455774 | 1456055 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 216 | 1279142 | 1279420 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 217 | 1516399 | 1516677 | + | NZ_AP019657.1 | Vibrio ponticus |
| 218 | 1623803 | 1624081 | - | NZ_CP009467.1 | Vibrio harveyi |
| 219 | 1602087 | 1602365 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 220 | 438294 | 438572 | + | NZ_CP019959.1 | Vibrio owensii |
| 221 | 1649914 | 1650192 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 222 | 1994715 | 1995002 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 223 | 2000127 | 2000414 | - | NZ_LT615367.1 | Dickeya aquatica |
| 224 | 1958783 | 1959064 | - | NZ_CP048796.1 | Providencia vermicola |
| 225 | 1066835 | 1067113 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 226 | 1305308 | 1305586 | - | NZ_CP033078.1 | Vibrio zhugei |
| 227 | 558386 | 558646 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 228 | 3178582 | 3178863 | + | NZ_CP029736.1 | Providencia rettgeri |
| 229 | 1998293 | 1998574 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 230 | 751310 | 751597 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 231 | 1806825 | 1807103 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 232 | 4211970 | 4212257 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 233 | 1143042 | 1143320 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 234 | 2235954 | 2236232 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 235 | 2466545 | 2466832 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 236 | 1739060 | 1739338 | - | NZ_CP046268.1 | Vibrio spartinae |
| 237 | 2055533 | 2055820 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 238 | 1458621 | 1458899 | - | NZ_AP014635.1 | Vibrio tritonius |
| 239 | 2015943 | 2016230 | - | NZ_CP025799.1 | Dickeya zeae |
| 240 | 2796385 | 2796672 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 241 | 1047101 | 1047379 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 242 | 2328120 | 2328398 | + | NZ_CP040990.1 | Vibrio furnissii |
| 243 | 2026957 | 2027235 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 244 | 1474092 | 1474370 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 245 | 2954940 | 2955218 | + | NZ_CP014056.2 | Grimontia hollisae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP015581.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00271.33 | 0.73 | 178 | 156.5 | same-strand | Helicase conserved C-terminal domain |
| 2 | PF00270.31 | 0.73 | 178 | 156.5 | same-strand | DEAD/DEAH box helicase |
| 3 | PF00849.24 | 0.65 | 159 | 2185.5 | opposite-strand | RNA pseudouridylate synthase |
| 4 | PF01479.27 | 0.65 | 158 | 2189 | opposite-strand | S4 domain |
| 5 | PF04851.17 | 0.66 | 160 | 156.0 | same-strand | Type III restriction enzyme, res subunit |
++ More..