* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015714.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00471.22
|
1.0
|
4
|
149.5
|
same-strand
|
Ribosomal protein L33
|
2
|
PF02357.21
|
1.0
|
4
|
6.5
|
same-strand
|
Transcription termination factor nusG
|
3
|
PF00467.31
|
1.0
|
4
|
6.5
|
same-strand
|
KOW motif
|
4
|
PF03946.16
|
1.0
|
4
|
672.0
|
same-strand
|
Ribosomal protein L11, N-terminal domain
|
5
|
PF00298.21
|
1.0
|
4
|
672.0
|
same-strand
|
Ribosomal protein L11, RNA binding domain
|
6
|
PF00687.23
|
1.0
|
4
|
1107.0
|
same-strand
|
Ribosomal protein L1p/L10e family
|
7
|
PF00466.22
|
1.0
|
4
|
1789.5
|
same-strand
|
Ribosomal protein L10
|
8
|
PF00542.21
|
1.0
|
4
|
2456.0
|
same-strand
|
Ribosomal protein L7/L12 C-terminal domain
|
9
|
PF16320.7
|
1.0
|
4
|
2456.0
|
same-strand
|
Ribosomal protein L7/L12 dimerisation domain
|
++ More..