Result : O66512
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | RNA-binding protein Hfq |
| NCBI Accession ID | AE000657.1 |
| Organism | Aquifex aeolicus (strain VF5) |
| Left | 66900 |
| Right | 67142 |
| Strand | - |
| Nucleotide Sequence | ATGCCTTACAAGTTGCAGGAGAGCTTTCTAAACACGGCGAGGAAGAAAAGGGTAAAGGTTTCAGTATACCTGGTAAACGGTGTAAGACTTCAGGGAAGGATAAGATCCTTTGATTTATTTACTATCCTTCTGGAGGATGGAAAACAGCAAACCTTAGTTTATAAACACGCTATAACTACGATAGTTCCCCACGAAAGGTTAGAGATAGAGTTTGAAGAAGCAGGAGTGCCGGGGCAAGGTTAA |
| Sequence | MPYKLQESFLNTARKKRVKVSVYLVNGVRLQGRIRSFDLFTILLEDGKQQTLVYKHAITTIVPHERLEIEFEEAGVPGQG |
| Source of smORF | Swiss-Prot |
| Function | RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. {ECO:0000255|HAMAP-Rule:MF_00436}. |
| Pubmed ID | 9537320 |
| Domain | CDD:412267 |
| Functional Category | RNA-binding |
| Uniprot ID | O66512 |
| ORF Length (Amino Acid) | 80 |
++ More..
| Conservation Analysis |
No. of Species: 232
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 66900 | 67142 | - | NC_000918.1 | Aquifex aeolicus VF5 |
| 2 | 138047 | 138289 | - | NZ_CP007028.1 | Thermocrinis ruber |
| 3 | 482361 | 482603 | + | NC_017161.1 | Hydrogenobacter thermophilus TK-6 |
| 4 | 1279264 | 1279506 | - | NC_013894.1 | Thermocrinis albus DSM 14484 |
| 5 | 957452 | 957652 | - | NZ_CP021106.3 | Nitrosospira lacus |
| 6 | 1322287 | 1322514 | + | NZ_CP012371.1 | Nitrosospira briensis C-128 |
| 7 | 3132436 | 3132687 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 8 | 211910 | 212161 | - | NZ_CP021323.1 | Kushneria konosiri |
| 9 | 703220 | 703471 | - | NZ_CP018139.1 | Halomonas aestuarii |
| 10 | 768004 | 768270 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 11 | 3839194 | 3839421 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 12 | 1974424 | 1974651 | - | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 13 | 628501 | 628725 | - | NZ_CP038033.1 | Nitrosococcus wardiae |
| 14 | 5708570 | 5708770 | - | NZ_CP018632.1 | Granulosicoccus antarcticus IMCC3135 |
| 15 | 2865259 | 2865495 | - | NC_019902.2 | Thioalkalivibrio nitratireducens DSM 14787 |
| 16 | 3842740 | 3842964 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 17 | 748883 | 749113 | - | NC_008789.1 | Halorhodospira halophila SL1 |
| 18 | 2909347 | 2909556 | - | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 19 | 674817 | 675011 | + | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 20 | 718827 | 719027 | - | NZ_CP020414.2 | Leptospira interrogans serovar Copenhageni |
| 21 | 2348636 | 2348860 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 22 | 968437 | 968679 | + | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 23 | 1523830 | 1524051 | - | NZ_CP036200.1 | Shewanella maritima |
| 24 | 3227758 | 3227994 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 25 | 958893 | 959117 | + | NC_019978.1 | Halobacteroides halobius DSM 5150 |
| 26 | 4516279 | 4516539 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 27 | 712391 | 712651 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 28 | 1081013 | 1081288 | + | NZ_CP029736.1 | Providencia rettgeri |
| 29 | 1966121 | 1966384 | - | NZ_AP014936.1 | Sulfurifustis variabilis |
| 30 | 2944027 | 2944257 | - | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 31 | 4333208 | 4333468 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 32 | 3046715 | 3046975 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 33 | 481592 | 481813 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 34 | 496699 | 496899 | - | NC_007614.1 | Nitrosospira multiformis ATCC 25196 |
| 35 | 548508 | 548738 | + | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 36 | 863970 | 864191 | + | NZ_CP013816.1 | Piscirickettsia salmonis |
| 37 | 576180 | 576374 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 38 | 713089 | 713343 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 39 | 2895851 | 2896063 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 40 | 2669852 | 2670052 | - | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 41 | 549338 | 549571 | + | NC_021291.1 | Spiribacter salinus M19-40 |
| 42 | 2946538 | 2946783 | - | NZ_CP021455.1 | Comamonas serinivorans |
| 43 | 1357624 | 1357818 | - | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 44 | 2422709 | 2422933 | + | NC_017856.1 | Methylophaga frappieri |
| 45 | 718381 | 718626 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 46 | 1157774 | 1158016 | - | NZ_CP007501.1 | Polynucleobacter duraquae |
| 47 | 2354617 | 2354823 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 48 | 742546 | 742812 | + | NZ_CP037951.1 | Parashewanella tropica |
| 49 | 2151958 | 2152194 | + | NZ_LR134378.1 | Lautropia mirabilis |
| 50 | 2946152 | 2946409 | - | NZ_CP029822.1 | Entomomonas moraniae |
| 51 | 3457974 | 3458249 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 52 | 2411860 | 2412066 | - | NZ_CP016268.1 | Woeseia oceani |
| 53 | 982452 | 982697 | + | NZ_CP011797.1 | Reinekea forsetii |
| 54 | 4243091 | 4243366 | - | NZ_CP046378.1 | Shewanella algae |
| 55 | 2619553 | 2619789 | - | NZ_CP053073.1 | Usitatibacter palustris |
| 56 | 3187799 | 3188011 | + | NC_018020.1 | Turneriella parva DSM 21527 |
| 57 | 2825850 | 2826083 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 58 | 800441 | 800671 | + | NZ_AP018738.1 | Ferriphaselus amnicola |
| 59 | 2932575 | 2932826 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 60 | 1407129 | 1407338 | - | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 61 | 575419 | 575664 | + | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 62 | 295803 | 296039 | + | NZ_CP040449.1 | Aeromonas simiae |
| 63 | 3285848 | 3286045 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 64 | 3526807 | 3527046 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 65 | 3599691 | 3599933 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 66 | 2477259 | 2477501 | - | NZ_CP011367.1 | Thioalkalivibrio versutus |
| 67 | 2145724 | 2145981 | - | NZ_CP046415.1 | Guyparkeria halophila |
| 68 | 1788552 | 1788749 | - | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 69 | 1169164 | 1169418 | - | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 70 | 3031880 | 3032119 | - | NZ_CP053069.1 | Usitatibacter rugosus |
| 71 | 3658955 | 3659164 | - | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 72 | 3336571 | 3336813 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 73 | 1411305 | 1411535 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 74 | 2283019 | 2283216 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 75 | 2102347 | 2102586 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 76 | 970356 | 970574 | + | NC_012968.1 | Methylotenera mobilis JLW8 |
| 77 | 1437264 | 1437479 | + | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 78 | 5989689 | 5989919 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 79 | 1581648 | 1581887 | - | NZ_CP041352.1 | Casimicrobium huifangae |
| 80 | 1554831 | 1555073 | - | NZ_CP021376.1 | Oceanisphaera avium |
| 81 | 2072007 | 2072207 | + | NZ_CP036259.1 | Sporomusa termitida |
| 82 | 1068916 | 1069134 | + | NC_014207.1 | Methylotenera versatilis 301 |
| 83 | 4111187 | 4111447 | - | NZ_AP018449.1 | Methylomusa anaerophila |
| 84 | 1005584 | 1005841 | + | NZ_CP011971.1 | Steroidobacter denitrificans |
| 85 | 1337710 | 1337922 | - | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 86 | 455332 | 455568 | - | NC_014926.1 | Thermovibrio ammonificans HB-1 |
| 87 | 5519294 | 5519545 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 88 | 2583778 | 2583987 | - | NZ_LS483250.1 | Moritella yayanosii |
| 89 | 2498657 | 2498899 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 90 | 2232102 | 2232350 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 91 | 1996625 | 1996825 | + | NZ_CP016171.1 | Bordetella bronchialis |
| 92 | 523207 | 523413 | + | NZ_CP036422.1 | Halioglobus maricola |
| 93 | 2038748 | 2038969 | - | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 94 | 3493251 | 3493460 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 95 | 3089640 | 3089864 | + | NZ_CP013661.2 | Planococcus kocurii |
| 96 | 2170762 | 2170986 | - | NZ_CP019401.1 | Planococcus faecalis |
| 97 | 375392 | 375634 | + | NZ_LT615228.1 | Polynucleobacter necessarius |
| 98 | 2386022 | 2386264 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 99 | 218012 | 218245 | - | NZ_AP019755.1 | Nitrosomonas stercoris |
| 100 | 1538508 | 1538750 | + | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 101 | 3119395 | 3119616 | + | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 102 | 2066671 | 2066892 | - | NZ_CP016022.1 | Ralstonia insidiosa |
| 103 | 1701305 | 1701505 | - | NC_007947.1 | Methylobacillus flagellatus KT |
| 104 | 1898232 | 1898447 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 105 | 2273449 | 2273694 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 106 | 2998669 | 2998884 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 107 | 2519911 | 2520126 | - | NC_010645.1 | Bordetella avium 197N |
| 108 | 1680421 | 1680630 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 109 | 2259544 | 2259741 | + | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 110 | 793585 | 793800 | + | NZ_CP043146.1 | Bordetella holmesii |
| 111 | 1200862 | 1201077 | + | NZ_CP016440.1 | Bordetella pseudohinzii |
| 112 | 2815674 | 2815919 | - | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 113 | 2945446 | 2945661 | + | NZ_CP021395.1 | Bordetella hinzii |
| 114 | 1369976 | 1370197 | + | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 115 | 1711727 | 1711972 | + | NZ_CP061941.1 | Marinomonas algicola |
| 116 | 1822527 | 1822721 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 117 | 3022872 | 3023072 | - | NZ_CP013236.1 | Collimonas pratensis |
| 118 | 642079 | 642294 | - | NZ_LR134302.1 | Achromobacter spanius |
| 119 | 4356879 | 4357115 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 120 | 431974 | 432210 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 121 | 1011253 | 1011495 | + | NZ_CP038018.1 | Eikenella exigua |
| 122 | 33699 | 33899 | + | NZ_LT906482.1 | Eikenella corrodens |
| 123 | 728632 | 728835 | - | NZ_CP031252.1 | Neisseria elongata |
| 124 | 3701676 | 3701921 | + | NZ_CP070273.1 | Marinomonas foliarum |
| 125 | 1645551 | 1645796 | + | NZ_CP054301.1 | Marinomonas primoryensis |
| 126 | 3937914 | 3938114 | - | NZ_CP016172.1 | Bordetella flabilis |
| 127 | 3561616 | 3561837 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 128 | 3397284 | 3397505 | - | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 129 | 1208197 | 1208412 | + | NZ_CP031124.1 | Ephemeroptericola cinctiostellae |
| 130 | 2040870 | 2041094 | - | NZ_CP016540.2 | Planococcus versutus |
| 131 | 2699254 | 2699508 | - | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 132 | 1118026 | 1118223 | - | NZ_CP023276.1 | Polynucleobacter difficilis |
| 133 | 1038378 | 1038575 | + | NZ_CP016210.1 | Azoarcus olearius |
| 134 | 4091609 | 4091830 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 135 | 2123907 | 2124143 | - | NZ_CP019038.1 | Massilia putida |
| 136 | 3332049 | 3332270 | + | NZ_CP012943.1 | Ralstonia solanacearum |
| 137 | 2453111 | 2453317 | - | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 138 | 1024491 | 1024727 | + | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 139 | 2585159 | 2585404 | - | NZ_CP061081.1 | Marinomonas arctica |
| 140 | 2129242 | 2129463 | + | NZ_CP068285.1 | Ralstonia syzygii subsp. celebesensis |
| 141 | 2113170 | 2113406 | + | NC_010170.1 | Bordetella petrii |
| 142 | 2787747 | 2787971 | - | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 143 | 871944 | 872180 | - | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 144 | 2906429 | 2906671 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 145 | 51172 | 51426 | - | NZ_CP068345.1 | Succinivibrio dextrinosolvens |
| 146 | 2360641 | 2360856 | - | NZ_AP019378.1 | Bordetella parapertussis |
| 147 | 2129087 | 2129323 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 148 | 1547036 | 1547281 | + | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 149 | 3299168 | 3299407 | + | NZ_CP027860.1 | Ahniella affigens |
| 150 | 227442 | 227678 | + | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 151 | 529838 | 530077 | - | NZ_CP047165.1 | Pelistega ratti |
| 152 | 2526832 | 2527032 | - | NZ_CP013235.1 | Collimonas arenae |
| 153 | 685432 | 685674 | - | NZ_CP016619.1 | Microvirga ossetica |
| 154 | 2540495 | 2540695 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 155 | 3762969 | 3763205 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 156 | 4850194 | 4850412 | - | NZ_CP028324.1 | Massilia armeniaca |
| 157 | 1902562 | 1902780 | - | NZ_CP046904.1 | Massilia flava |
| 158 | 111617 | 111853 | - | NZ_CP034464.1 | Undibacterium parvum |
| 159 | 2025754 | 2025978 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 160 | 2130075 | 2130299 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 161 | 1566668 | 1566907 | - | NZ_CP028901.1 | Algicoccus marinus |
| 162 | 2001718 | 2001945 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 163 | 4817689 | 4817925 | - | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 164 | 2501119 | 2501355 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 165 | 4905434 | 4905670 | - | NZ_CP048832.1 | Janthinobacterium lividum |
| 166 | 459075 | 459320 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 167 | 2288175 | 2288387 | - | NZ_AP012273.1 | Thiolapillus brandeum |
| 168 | 2558072 | 2558284 | - | NZ_CP034588.1 | Silicimonas algicola |
| 169 | 2870996 | 2871235 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 170 | 2737829 | 2738023 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 171 | 3159876 | 3160124 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 172 | 663873 | 664115 | - | NZ_CP016616.1 | Microvirga ossetica |
| 173 | 1355679 | 1355885 | + | NZ_CP051461.1 | Polaromonas vacuolata |
| 174 | 2953704 | 2953901 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 175 | 2170589 | 2170789 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 176 | 78166 | 78408 | - | NZ_CP017480.1 | Luteibacter rhizovicinus DSM 16549 |
| 177 | 1288245 | 1288469 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 178 | 922490 | 922693 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 179 | 2133290 | 2133535 | - | NC_008825.1 | Methylibium petroleiphilum PM1 |
| 180 | 2260457 | 2260690 | + | NZ_CP004393.1 | Celeribacter indicus |
| 181 | 2205127 | 2205360 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 182 | 435696 | 435923 | + | NZ_CP059567.1 | Neisseria shayeganii |
| 183 | 3152113 | 3152337 | - | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 184 | 1806510 | 1806728 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 185 | 1041691 | 1041927 | - | NZ_CP022196.1 | Celeribacter ethanolicus |
| 186 | 2295193 | 2295426 | - | NZ_CP019437.1 | Thioclava nitratireducens |
| 187 | 952376 | 952609 | - | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 188 | 2076066 | 2076299 | - | NZ_CP012661.1 | Defluviimonas alba |
| 189 | 807790 | 808029 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 190 | 2427144 | 2427386 | - | NC_014414.1 | Parvularcula bermudensis HTCC2503 |
| 191 | 2725997 | 2726230 | - | NZ_CP024899.1 | Rhodobaca barguzinensis |
| 192 | 1489897 | 1490091 | + | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 193 | 3421391 | 3421624 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 194 | 589573 | 589812 | - | NZ_CP012023.1 | Celeribacter marinus |
| 195 | 752244 | 752447 | - | NZ_CP035765.1 | Sphingomonas paucimobilis |
| 196 | 3446944 | 3447183 | + | NZ_CP015093.1 | Salipiger abyssi |
| 197 | 542161 | 542394 | + | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 198 | 2080627 | 2080866 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 199 | 650537 | 650731 | - | NZ_CP027407.1 | Roseobacter denitrificans |
| 200 | 1848121 | 1848315 | + | NC_015730.1 | Roseobacter litoralis Och 149 |
| 201 | 3148393 | 3148626 | + | NZ_CP030918.1 | Paracoccus suum |
| 202 | 1754109 | 1754303 | - | NZ_CP012024.1 | Bacillus smithii |
| 203 | 1060744 | 1060983 | + | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 204 | 1789498 | 1789731 | - | NZ_CP020612.1 | Paracoccus contaminans |
| 205 | 1413845 | 1414084 | + | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 206 | 1327351 | 1327590 | + | NZ_CP041159.1 | Leisingera aquaemixtae |
| 207 | 3773049 | 3773282 | + | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 208 | 1506772 | 1507011 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 209 | 1632675 | 1632887 | - | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 210 | 1895793 | 1896032 | - | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 211 | 2466901 | 2467125 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 212 | 1913234 | 1913428 | - | NZ_CP048788.1 | Roseobacter ponti |
| 213 | 1390430 | 1390663 | + | NZ_CP045073.1 | Paracoccus kondratievae |
| 214 | 1005686 | 1005919 | + | NZ_LN832559.1 | Paracoccus aminovorans |
| 215 | 75561 | 75794 | - | NZ_CP024422.1 | Paracoccus yeei |
| 216 | 530818 | 531051 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 217 | 1678794 | 1679021 | - | NZ_LR134483.1 | Listeria grayi |
| 218 | 2210059 | 2210259 | - | NZ_CP020559.1 | Clostridium formicaceticum |
| 219 | 2013971 | 2014180 | - | NZ_CP009687.1 | Clostridium aceticum |
| 220 | 13101 | 13316 | + | NZ_CP013742.1 | Legionella pneumophila |
| 221 | 1957027 | 1957254 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 222 | 1211345 | 1211542 | - | NZ_CP060035.1 | Sphingobium fuliginis |
| 223 | 1676266 | 1676496 | - | NZ_CP042306.1 | Sphingomonas panacisoli |
| 224 | 515538 | 515759 | - | NZ_CP023705.1 | Sphingomonas melonis |
| 225 | 369552 | 369776 | - | NZ_CP020538.1 | Sphingobium herbicidovorans |
| 226 | 929682 | 929897 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 227 | 1986809 | 1987036 | + | NZ_CP061038.1 | Sphingomonas alpina |
| 228 | 2524261 | 2524512 | + | NZ_CP042582.1 | Hypericibacter adhaerens |
| 229 | 1336692 | 1336889 | + | NZ_CP012908.1 | Ketogulonicigenium vulgare |
| 230 | 1127585 | 1127782 | - | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 231 | 1669448 | 1669645 | - | NC_014006.1 | Sphingobium japonicum UT26S |
| 232 | 2884994 | 2885215 | - | NZ_CP022745.1 | Sphingobium xenophagum |
| 233 | 697178 | 697399 | + | NZ_CP009571.1 | Sphingomonas taxi |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP021106.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01145.27 | 0.63 | 146 | 2354 | same-strand | SPFH domain / Band 7 family |
| 2 | PF13167.8 | 0.85 | 197 | 36 | same-strand | GTP-binding GTPase N-terminal |
| 3 | PF16360.7 | 0.84 | 196 | 36.0 | same-strand | GTP-binding GTPase Middle Region |
| 4 | PF01926.25 | 0.88 | 203 | 64.5 | same-strand | 50S ribosome-binding GTPase |
++ More..