* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF09643.12
|
1.0
|
2
|
395.0
|
same-strand
|
YopX protein
|
2
|
PF09467.12
|
1.0
|
2
|
379.0
|
same-strand
|
Hypothetical protein Yopt
|
3
|
PF13443.8
|
1.0
|
2
|
779.5
|
opposite-strand
|
Cro/C1-type HTH DNA-binding domain
|
4
|
PF01381.24
|
1.0
|
2
|
779.5
|
opposite-strand
|
Helix-turn-helix
|
5
|
PF14072.8
|
1.0
|
2
|
2193.5
|
same-strand
|
DNA-sulfur modification-associated
|
++ More..