Result : A2SG01
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S18 |
| NCBI Accession ID | CP000555.1 |
| Organism | Methylibium petroleiphilum (strain ATCC BAA-1232 / LMG 22953 / PM1) |
| Left | 1647128 |
| Right | 1647418 |
| Strand | + |
| Nucleotide Sequence | ATGCCCCCGCCCCGTGGTAAAGGCCGTTTCGGCAAGGACAAGCGCCCGAAGCGCAACACCCAATCGCTGCTGTTCCGTCGCAAGCGCTTCTGCCGCTTCACGGTCACCGGCGTTACCGAGATCGACTACAAGGATGTCGACACGCTGCGCGACTTCATCGCCGAGAACGGCAAGATCACGCCCGCCCGCCTGACCGGCACGCGTGCCTTCTTCCAGCGTCAGCTGTCGACCTGCATCAAGCGCGCCCGCTTCCTGGCCCTGCTGCCGTACAGCGACCAGCACAAGTCCTGA |
| Sequence | MPPPRGKGRFGKDKRPKRNTQSLLFRRKRFCRFTVTGVTEIDYKDVDTLRDFIAENGKITPARLTGTRAFFQRQLSTCIKRARFLALLPYSDQHKS |
| Source of smORF | Swiss-Prot |
| Function | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_00270}. |
| Pubmed ID | 17158667 |
| Domain | CDD:412341 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A2SG01 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 177
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1647128 | 1647418 | + | NC_008825.1 | Methylibium petroleiphilum PM1 |
| 2 | 2945152 | 2945442 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 3 | 1796738 | 1797028 | + | NZ_CP013729.1 | Roseateles depolymerans |
| 4 | 2834825 | 2835115 | - | NZ_CP040709.1 | Inhella inkyongensis |
| 5 | 1806901 | 1807182 | + | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 6 | 3115174 | 3115458 | - | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 7 | 2563037 | 2563318 | - | NZ_CP035503.1 | Rhodoferax sediminis |
| 8 | 2919138 | 2919419 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 9 | 590938 | 591219 | - | NZ_CP027669.1 | Simplicispira suum |
| 10 | 1096205 | 1096486 | + | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 11 | 653087 | 653368 | + | NZ_AP014568.1 | Serpentinomonas raichei |
| 12 | 5138670 | 5138951 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 13 | 208282 | 208563 | + | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 14 | 1712601 | 1712894 | - | NZ_CP029210.1 | Aquabacterium olei |
| 15 | 1391165 | 1391446 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 16 | 3313425 | 3313706 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 17 | 1355150 | 1355431 | + | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 18 | 1977984 | 1978265 | - | NZ_CP060790.1 | Acidovorax monticola |
| 19 | 2160409 | 2160693 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 20 | 419145 | 419426 | - | NZ_CP020121.1 | Comamonas kerstersii |
| 21 | 1529347 | 1529628 | - | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 22 | 1527695 | 1527976 | - | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 23 | 3788157 | 3788438 | - | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 24 | 2999632 | 2999913 | - | NZ_CP027666.1 | Ottowia oryzae |
| 25 | 1707089 | 1707373 | + | NZ_CP051461.1 | Polaromonas vacuolata |
| 26 | 2525403 | 2525687 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 27 | 4536754 | 4537038 | - | NZ_CP019236.1 | Rhodoferax koreense |
| 28 | 2124202 | 2124483 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 29 | 2559709 | 2559990 | - | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 30 | 3127488 | 3127769 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 31 | 6431075 | 6431356 | + | NZ_CP065748.1 | Delftia lacustris |
| 32 | 6386552 | 6386833 | + | NZ_CP017420.1 | Delftia tsuruhatensis |
| 33 | 2081997 | 2082281 | - | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 34 | 1822493 | 1822774 | + | NZ_CP043575.1 | Comamonas koreensis |
| 35 | 3419286 | 3419567 | - | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 36 | 2042866 | 2043147 | + | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 37 | 1354665 | 1354946 | + | NZ_CP027792.1 | Pulveribacter suum |
| 38 | 2396076 | 2396360 | + | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 39 | 1502042 | 1502326 | + | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 40 | 2024124 | 2024408 | + | NZ_CP019240.1 | Rhodoferax antarcticus |
| 41 | 1014857 | 1015132 | + | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 42 | 520061 | 520351 | - | NZ_CP020046.1 | Thiomonas intermedia |
| 43 | 1761358 | 1761633 | - | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 44 | 2219790 | 2220065 | - | NC_007510.1 | Burkholderia lata |
| 45 | 2145258 | 2145533 | - | NZ_CP013401.1 | Burkholderia metallica |
| 46 | 2125651 | 2125926 | - | NZ_CP013450.1 | Burkholderia cenocepacia |
| 47 | 2155205 | 2155480 | - | NZ_CP045235.1 | Burkholderia cepacia |
| 48 | 2689166 | 2689450 | - | NZ_CP011568.3 | Pandoraea thiooxydans |
| 49 | 1784849 | 1785124 | - | NZ_CP049134.1 | Paraburkholderia tropica |
| 50 | 1116866 | 1117138 | - | NZ_CP013119.1 | Alcaligenes faecalis |
| 51 | 3403972 | 3404247 | - | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 52 | 2081847 | 2082122 | - | NZ_CP013398.1 | Burkholderia seminalis |
| 53 | 102738 | 103013 | + | NZ_CP015958.1 | Paraburkholderia caribensis |
| 54 | 1974004 | 1974279 | - | NZ_CP026111.1 | Paraburkholderia terrae |
| 55 | 1349507 | 1349782 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 56 | 794333 | 794608 | - | NZ_CP035900.1 | Burkholderia glumae |
| 57 | 2654877 | 2655152 | - | NZ_CP002580.1 | Burkholderia plantarii |
| 58 | 1703266 | 1703541 | - | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 59 | 1738776 | 1739051 | - | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 60 | 204279 | 204545 | + | NZ_CP047165.1 | Pelistega ratti |
| 61 | 1143064 | 1143336 | - | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 62 | 1370965 | 1371240 | - | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 63 | 2407708 | 2407983 | - | NZ_CP009727.1 | Burkholderia mallei |
| 64 | 3454516 | 3454791 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 65 | 2077842 | 2078117 | - | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 66 | 2152128 | 2152403 | - | NZ_CP020737.1 | Paraburkholderia acidophila |
| 67 | 2333282 | 2333557 | - | NZ_CP013414.1 | Burkholderia ubonensis |
| 68 | 3413321 | 3413596 | + | NZ_CP041352.1 | Casimicrobium huifangae |
| 69 | 3597957 | 3598232 | - | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 70 | 2208849 | 2209124 | + | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 71 | 830134 | 830406 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 72 | 2454984 | 2455259 | + | NC_007651.1 | Burkholderia thailandensis E264 |
| 73 | 1141047 | 1141322 | - | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 74 | 3525071 | 3525346 | + | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 75 | 3919644 | 3919919 | + | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 76 | 2703451 | 2703717 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 77 | 1693628 | 1693894 | + | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 78 | 1769873 | 1770148 | + | NZ_CP024934.1 | Paraburkholderia graminis |
| 79 | 2230117 | 2230392 | - | NZ_CP013459.1 | Burkholderia stagnalis |
| 80 | 673106 | 673378 | + | NC_018518.1 | Bordetella pertussis 18323 |
| 81 | 1956390 | 1956662 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 82 | 1685717 | 1685989 | + | NZ_LR134326.1 | Bordetella bronchiseptica |
| 83 | 1404197 | 1404469 | - | NZ_CP023276.1 | Polynucleobacter difficilis |
| 84 | 1659740 | 1660015 | + | NZ_CP024941.1 | Paraburkholderia terricola |
| 85 | 2156413 | 2156694 | + | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 86 | 2326331 | 2326612 | + | NC_023018.2 | Pandoraea pnomenusa |
| 87 | 2319269 | 2319550 | + | NZ_CP011253.3 | Pandoraea oxalativorans |
| 88 | 2364191 | 2364472 | + | NZ_CP010897.2 | Pandoraea vervacti |
| 89 | 3087170 | 3087451 | - | NZ_LT906435.1 | Pandoraea sputorum |
| 90 | 2523304 | 2523585 | + | NZ_CP010310.2 | Pandoraea pulmonicola |
| 91 | 3356914 | 3357195 | - | NZ_CP013480.3 | Pandoraea norimbergensis |
| 92 | 99645 | 99917 | + | NZ_LT615228.1 | Polynucleobacter necessarius |
| 93 | 1465742 | 1466014 | - | NZ_CP007501.1 | Polynucleobacter duraquae |
| 94 | 411466 | 411738 | + | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 95 | 2575159 | 2575440 | + | NZ_CP013481.2 | Pandoraea apista |
| 96 | 3863820 | 3864101 | - | NZ_CP047385.1 | Pandoraea fibrosis |
| 97 | 2007591 | 2007866 | + | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 98 | 1144252 | 1144518 | - | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 99 | 1159990 | 1160256 | - | NZ_CP021060.1 | Taylorella equigenitalis |
| 100 | 1350587 | 1350862 | + | NC_021287.1 | Caballeronia insecticola |
| 101 | 2289270 | 2289542 | - | NZ_CP031124.1 | Ephemeroptericola cinctiostellae |
| 102 | 2670838 | 2671113 | - | NZ_LR134378.1 | Lautropia mirabilis |
| 103 | 3916212 | 3916484 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 104 | 1639894 | 1640166 | + | NZ_CP016440.1 | Bordetella pseudohinzii |
| 105 | 3408787 | 3409059 | + | NZ_CP021395.1 | Bordetella hinzii |
| 106 | 4649124 | 4649396 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 107 | 4349513 | 4349785 | + | NZ_LR134302.1 | Achromobacter spanius |
| 108 | 2030871 | 2031143 | + | NZ_CP016172.1 | Bordetella flabilis |
| 109 | 137559 | 137831 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 110 | 2697359 | 2697631 | - | NZ_CP043146.1 | Bordetella holmesii |
| 111 | 2335221 | 2335493 | - | NC_010645.1 | Bordetella avium 197N |
| 112 | 4988715 | 4989005 | - | NZ_CP028324.1 | Massilia armeniaca |
| 113 | 2066399 | 2066689 | - | NZ_CP046904.1 | Massilia flava |
| 114 | 3217698 | 3217988 | - | NZ_CP040017.1 | Massilia umbonata |
| 115 | 1264659 | 1264949 | + | NZ_CP036401.1 | Massilia albidiflava |
| 116 | 2323788 | 2324078 | - | NZ_CP019038.1 | Massilia putida |
| 117 | 3203080 | 3203352 | - | NC_010170.1 | Bordetella petrii |
| 118 | 1348590 | 1348874 | - | NZ_CP018845.1 | Herbaspirillum robiniae |
| 119 | 2336485 | 2336769 | + | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 120 | 2244183 | 2244467 | + | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 121 | 2387202 | 2387486 | + | NZ_CP037993.1 | Herbaspirillum huttiense |
| 122 | 1271958 | 1272233 | + | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 123 | 2205517 | 2205789 | + | NZ_CP043046.1 | Pigmentiphaga aceris |
| 124 | 2500838 | 2501110 | - | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 125 | 1172731 | 1173015 | - | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 126 | 3917840 | 3918130 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 127 | 5012170 | 5012460 | - | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 128 | 2670104 | 2670394 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 129 | 5075094 | 5075384 | - | NZ_CP048832.1 | Janthinobacterium lividum |
| 130 | 335806 | 336075 | + | NZ_CP028901.1 | Algicoccus marinus |
| 131 | 1412157 | 1412429 | - | NZ_CP040882.1 | Sutterella faecalis |
| 132 | 3687301 | 3687591 | + | NZ_CP024608.1 | Massilia violaceinigra |
| 133 | 793480 | 793755 | + | NZ_AP018150.1 | Mycoavidus cysteinexigens |
| 134 | 128519 | 128791 | + | NZ_CP068055.1 | Sutterella wadsworthensis |
| 135 | 2270522 | 2270806 | + | NZ_CP013236.1 | Collimonas pratensis |
| 136 | 3430357 | 3430641 | - | NZ_CP013232.1 | Collimonas fungivorans |
| 137 | 1726620 | 1726892 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 138 | 2715471 | 2715743 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 139 | 1895040 | 1895324 | + | NZ_CP013235.1 | Collimonas arenae |
| 140 | 1022874 | 1023152 | - | NZ_AP019755.1 | Nitrosomonas stercoris |
| 141 | 2496884 | 2497126 | - | NC_008344.1 | Nitrosomonas eutropha C91 |
| 142 | 1649319 | 1649591 | - | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 143 | 234051 | 234293 | - | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 144 | 2966184 | 2966432 | + | NZ_CP011451.1 | Nitrosomonas communis |
| 145 | 1616170 | 1616451 | + | NZ_CP022579.1 | Oryzomicrobium terrae |
| 146 | 1163086 | 1163373 | + | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 147 | 277120 | 277404 | - | NZ_CP034464.1 | Undibacterium parvum |
| 148 | 2131787 | 2132062 | - | NC_014394.1 | Gallionella capsiferriformans ES-2 |
| 149 | 372754 | 373029 | + | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 150 | 2713832 | 2714101 | - | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 151 | 31675 | 31947 | + | NZ_AP021881.1 | Sulfuriferula nivalis |
| 152 | 713609 | 713878 | + | NZ_AP018738.1 | Ferriphaselus amnicola |
| 153 | 1812258 | 1812524 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 154 | 789088 | 789354 | - | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 155 | 451513 | 451794 | + | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 156 | 1908769 | 1909014 | + | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 157 | 2228967 | 2229212 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 158 | 5759165 | 5759398 | + | NZ_CP027860.1 | Ahniella affigens |
| 159 | 774935 | 775213 | - | NZ_CP034437.1 | Paenibacillus albus |
| 160 | 164936 | 165214 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 161 | 3642335 | 3642613 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 162 | 961683 | 961955 | - | NZ_CP043611.1 | Paenibacillus antarcticus |
| 163 | 1895357 | 1895629 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 164 | 7149888 | 7150160 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 165 | 1853593 | 1853865 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 166 | 7902829 | 7903101 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 167 | 8140227 | 8140499 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 168 | 423425 | 423664 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 169 | 6796130 | 6796402 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 170 | 7044098 | 7044370 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 171 | 5348118 | 5348399 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 172 | 6476951 | 6477220 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 173 | 3764608 | 3764877 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 174 | 1499012 | 1499269 | - | NC_022097.1 | Treponema pedis str. T A4 |
| 175 | 1044786 | 1045055 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 176 | 1729463 | 1729720 | - | NC_002967.9 | Treponema denticola ATCC 35405 |
| 177 | 2240202 | 2240459 | + | NZ_CP009228.1 | Treponema putidum |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008825.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01250.19 | 0.99 | 176 | 353.0 | same-strand | Ribosomal protein S6 |
| 2 | PF03948.16 | 0.91 | 161 | 19 | same-strand | Ribosomal protein L9, C-terminal domain |
| 3 | PF01281.21 | 0.92 | 162 | 19.0 | same-strand | Ribosomal protein L9, N-terminal domain |
| 4 | PF03796.17 | 0.82 | 145 | 649 | same-strand | DnaB-like helicase C terminal domain |
| 5 | PF00772.23 | 0.82 | 145 | 649 | same-strand | DnaB-like helicase N terminal domain |
| 6 | PF13481.8 | 0.79 | 139 | 651.5 | same-strand | AAA domain |
++ More..