Result : O33505
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | PqqA binding protein (Coenzyme PQQ synthesis protein D) (Pyrroloquinoline quinone biosynthesis protein D) |
| NCBI Accession ID | AF007584.1 |
| Organism | Rahnella aquatilis |
| Left | 228 |
| Right | 485 |
| Strand | + |
| Nucleotide Sequence | ATGTTTCGTCGCGGCTACCGCATGCAATTTGAAAAAACACAGGACTGCCACGTGATTTTGTATCCTGAAGGGATGGCGAAACTCAACGACAGTGCGACGTTTATTTTGCAACTGGTCGACGGCGAGCGGACGATTGCCAATATCATTGATGAGCTGAATGAGCGCTTCCCTGAAGCCGGTGGCGTGAATGATGACGTTAAAGATTTCTTCGCTCAGGCCCATGCACAAAAGTGGATTACCTTCCGTGAACCTGCTTAA |
| Sequence | MITITEHYTPMFRRGYRMQFEKTQDCHVILYPEGMAKLNDSATFILQLVDGERTIANIIDELNERFPEAGGVNDDVKDFFAQAHAQKWITFREPA |
| Source of smORF | Swiss-Prot |
| Function | Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway. {ECO:0000255|HAMAP-Rule:MF_00655}. |
| Pubmed ID | 9485602 |
| Domain | CDD:414309 |
| Functional Category | Others |
| Uniprot ID | O33505 |
| ORF Length (Amino Acid) | 95 |
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| Conservation Analysis |
No. of Species: 80
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 333633 | 333920 | + | NZ_CP067059.1 | Rahnella aceris |
| 2 | 4195510 | 4195794 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 3 | 3213705 | 3213962 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 4 | 3171667 | 3171948 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 5 | 3333597 | 3333854 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 6 | 396295 | 396573 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 7 | 1892369 | 1892632 | + | NZ_CP015581.1 | Tatumella citrea |
| 8 | 2516041 | 2516319 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 9 | 3964998 | 3965249 | - | NZ_CP065640.1 | Serratia rubidaea |
| 10 | 976053 | 976331 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 11 | 2554994 | 2555272 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 12 | 330633 | 330869 | + | NZ_CP049115.1 | Pantoea stewartii |
| 13 | 2577995 | 2578273 | + | NZ_CP071320.1 | Serratia ureilytica |
| 14 | 1830715 | 1830993 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 15 | 245303 | 245581 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 16 | 3083272 | 3083550 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 17 | 2455440 | 2455718 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 18 | 2441639 | 2441875 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 19 | 954147 | 954425 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 20 | 1917404 | 1917682 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 21 | 2141344 | 2141622 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 22 | 2543402 | 2543680 | - | NZ_CP054254.1 | Klebsiella variicola |
| 23 | 2141793 | 2142071 | - | NZ_CP038853.1 | Pantoea vagans |
| 24 | 2475948 | 2476226 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 25 | 2772570 | 2772848 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 26 | 3368068 | 3368346 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 27 | 1777748 | 1778029 | - | NZ_LR134201.1 | Cedecea lapagei |
| 28 | 962821 | 963099 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 29 | 248799 | 249077 | + | NZ_CP061511.1 | Mixta calida |
| 30 | 3174212 | 3174490 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 31 | 957700 | 957978 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 32 | 2618574 | 2618855 | - | NZ_LT906479.1 | Serratia ficaria |
| 33 | 254192 | 254455 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 34 | 320635 | 320913 | + | NZ_CP026377.1 | Mixta gaviniae |
| 35 | 1346463 | 1346741 | - | NZ_CP019706.1 | Pantoea alhagi |
| 36 | 1729172 | 1729453 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 37 | 4053191 | 4053469 | + | NZ_CP028271.1 | Mixta intestinalis |
| 38 | 2173692 | 2173940 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 39 | 2261147 | 2261428 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 40 | 2456906 | 2457187 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 41 | 3220662 | 3220940 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 42 | 48338 | 48616 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 43 | 71590 | 71865 | - | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 44 | 1813203 | 1813481 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 45 | 4546933 | 4547172 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 46 | 2381942 | 2382217 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 47 | 6308732 | 6309007 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 48 | 4088640 | 4088894 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 49 | 2651489 | 2651770 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 50 | 3033276 | 3033530 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 51 | 3120245 | 3120502 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 52 | 1726259 | 1726504 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 53 | 4199558 | 4199836 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 54 | 3475424 | 3475684 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 55 | 3663876 | 3664154 | - | NZ_CP002581.1 | Burkholderia plantarii |
| 56 | 850808 | 851071 | + | NZ_CP020931.1 | Marinobacter salarius |
| 57 | 3538012 | 3538284 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 58 | 6242116 | 6242391 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 59 | 4799279 | 4799554 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 60 | 269698 | 269973 | + | NZ_CP049136.1 | Paraburkholderia tropica |
| 61 | 2831793 | 2832038 | + | NC_018691.1 | Alcanivorax dieselolei B5 |
| 62 | 3891099 | 3891362 | + | NZ_CP017715.1 | Marinobacter salinus |
| 63 | 3537760 | 3538038 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 64 | 1125717 | 1125995 | - | NZ_CP035901.1 | Burkholderia glumae |
| 65 | 1398078 | 1398332 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 66 | 952989 | 953237 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 67 | 5413419 | 5413694 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 68 | 3291808 | 3292071 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 69 | 336781 | 337056 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 70 | 5348132 | 5348407 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 71 | 5535841 | 5536116 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 72 | 5942014 | 5942289 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 73 | 6279460 | 6279735 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 74 | 6220570 | 6220845 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 75 | 6262313 | 6262588 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 76 | 3601261 | 3601509 | - | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 77 | 5573631 | 5573906 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 78 | 558830 | 559126 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 79 | 5461731 | 5461988 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 80 | 390443 | 390700 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 81 | 1808538 | 1808825 | - | NZ_CP048812.1 | Halomonas socia |
| 82 | 4964794 | 4965069 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 83 | 5474867 | 5475142 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 84 | 4635952 | 4636191 | + | NZ_CP059560.1 | Aromatoleum petrolei |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010694.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12706.9 | 1.0 | 80 | 767.0 | same-strand | Beta-lactamase superfamily domain |
| 2 | PF03070.18 | 1.0 | 80 | 0.0 | same-strand | TENA/THI-4/PQQC family |
| 3 | PF04055.23 | 1.0 | 80 | -13.0 | same-strand | Radical SAM superfamily |
| 4 | PF13186.8 | 0.94 | 75 | -13 | same-strand | Iron-sulfur cluster-binding domain |
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