* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF18801.3
|
1.0
|
9
|
1
|
same-strand
|
response regulator aspartate phosphatase H, N terminal
|
2
|
PF13424.8
|
1.0
|
9
|
1
|
same-strand
|
Tetratricopeptide repeat
|
3
|
PF00491.23
|
0.78
|
7
|
39
|
opposite-strand
|
Arginase family
|
4
|
PF00324.23
|
0.78
|
7
|
1003
|
opposite-strand
|
Amino acid permease
|
5
|
PF13520.8
|
0.78
|
7
|
1003
|
opposite-strand
|
Amino acid permease
|
6
|
PF00202.23
|
0.78
|
7
|
2630
|
opposite-strand
|
Aminotransferase class-III
|
7
|
PF00158.28
|
0.78
|
7
|
4076
|
same-strand
|
Sigma-54 interaction domain
|
8
|
PF14532.8
|
0.78
|
7
|
4076
|
same-strand
|
Sigma-54 interaction domain
|
9
|
PF02954.21
|
0.78
|
7
|
4076
|
same-strand
|
Bacterial regulatory protein, Fis family
|
10
|
PF13426.9
|
0.78
|
7
|
4076
|
same-strand
|
PAS domain
|
11
|
PF07728.16
|
0.78
|
7
|
4076
|
same-strand
|
AAA domain (dynein-related subfamily)
|
12
|
PF08448.12
|
0.78
|
7
|
4076
|
same-strand
|
PAS fold
|
13
|
PF07726.13
|
0.78
|
7
|
4076
|
same-strand
|
ATPase family associated with various cellular activities (AAA)
|
++ More..