Result : O32242
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Transcriptional repressor SdpR |
| NCBI Accession ID | AL009126.3 |
| Organism | Bacillus subtilis (strain 168) |
| Left | 3467054 |
| Right | 3467326 |
| Strand | - |
| Nucleotide Sequence | ATGAATAATGTTTTCAAAGCTATATCAGATCCAACAAGGAGAAAAATTTTGGATTTGTTAAAAGGAGGGGATATGACTGCGGGAGATATTGCTGAGCATTTTAATATCAGCAAACCGAGTATTTCGCACCACTTGAATATTTTAAAGCAAGCGGAAGTCATAAGTGACCATCGCAAAGGACAATTTATTTATTACTCTCTAAATACAACAGTACTTCAAGACTCAATAAATTGGATGCTTAACTTTATAAATAAAGGGGATAACGATTTATGA |
| Sequence | MNNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKGQFIYYSLNTTVLQDSINWMLNFINKGDNDL |
| Source of smORF | Swiss-Prot |
| Function | Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation. {ECO:0000269|Pubmed:16469701}. |
| Pubmed ID | 9384377 16469701 23687264 |
| Domain | CDD:419669 |
| Functional Category | DNA-binding |
| Uniprot ID | O32242 |
| ORF Length (Amino Acid) | 90 |
++ More..
| Conservation Analysis |
No. of Species: 126
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2784495 | 2784767 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 2 | 3467054 | 3467326 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 3 | 4784892 | 4785164 | - | NC_011725.1 | Bacillus cereus B4264 |
| 4 | 546706 | 546978 | + | NZ_CP040336.1 | Bacillus luti |
| 5 | 4825375 | 4825647 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 6 | 639857 | 640129 | - | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 7 | 4639049 | 4639321 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 8 | 2926192 | 2926458 | + | NZ_CP026363.1 | Brevibacillus agri |
| 9 | 2172425 | 2172649 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 10 | 116067 | 116291 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 11 | 1250675 | 1250899 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 12 | 221460 | 221747 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 13 | 2280362 | 2280619 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 14 | 3124116 | 3124367 | - | NZ_LR134338.1 | Brevibacillus brevis |
| 15 | 1375056 | 1375280 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 16 | 437041 | 437328 | - | NZ_CP024955.1 | Kyrpidia spormannii |
| 17 | 845907 | 846191 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 18 | 2562077 | 2562307 | - | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 19 | 1790213 | 1790434 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 20 | 1884380 | 1884601 | + | NZ_CP017253.2 | Clostridium taeniosporum |
| 21 | 3425956 | 3426198 | + | NZ_CP022657.1 | Tumebacillus algifaecis |
| 22 | 82300 | 82587 | + | NZ_CP011937.1 | Bacillus velezensis |
| 23 | 2930753 | 2931022 | - | NZ_CP021434.1 | Tumebacillus avium |
| 24 | 2788804 | 2789076 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 25 | 5421557 | 5421829 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 26 | 3650746 | 3651015 | - | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 27 | 3177404 | 3177703 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 28 | 1073591 | 1073881 | + | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 29 | 340888 | 341109 | - | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 30 | 1197962 | 1198240 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 31 | 880363 | 880647 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 32 | 38838 | 39056 | - | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 33 | 2054376 | 2054648 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 34 | 799322 | 799606 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 35 | 1063335 | 1063598 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 36 | 1262283 | 1262558 | - | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 37 | 2892544 | 2892813 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 38 | 3723493 | 3723765 | + | NZ_CP033433.1 | Cohnella candidum |
| 39 | 2796864 | 2797151 | + | NC_015520.1 | Mahella australiensis 50-1 BON |
| 40 | 2163877 | 2164098 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 41 | 285247 | 285531 | - | NZ_CP030776.1 | Clostridium butyricum |
| 42 | 2274492 | 2274758 | - | NZ_CP034118.1 | Staphylospora marina |
| 43 | 1646013 | 1646234 | + | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 44 | 2838764 | 2839018 | + | NZ_CP043612.1 | Flavobacterium nitrogenifigens |
| 45 | 5383341 | 5383613 | - | NZ_CP034437.1 | Paenibacillus albus |
| 46 | 6566626 | 6566889 | + | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 47 | 1813848 | 1814102 | - | NZ_LR134503.1 | Kaistella jeonii |
| 48 | 3877069 | 3877353 | - | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 49 | 5785440 | 5785694 | - | NZ_CP029255.1 | Flavobacterium crocinum |
| 50 | 858110 | 858412 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 51 | 3694102 | 3694356 | + | NC_020156.1 | Nonlabens dokdonensis DSW-6 |
| 52 | 1977163 | 1977459 | + | NZ_CP053435.1 | Spirosoma taeanense |
| 53 | 4313668 | 4313952 | - | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 54 | 1444120 | 1444398 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 55 | 4793788 | 4794066 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 56 | 200362 | 200643 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 57 | 2170217 | 2170489 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 58 | 1367233 | 1367502 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 59 | 6908926 | 6909195 | + | NZ_CP032869.1 | Mucilaginibacter celer |
| 60 | 6001771 | 6002049 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 61 | 5083724 | 5084044 | + | NZ_CP009288.1 | Paenibacillus durus |
| 62 | 895069 | 895323 | + | NZ_CP039456.1 | Changchengzhania lutea |
| 63 | 1875059 | 1875313 | - | NZ_CP029463.1 | Flavobacterium sediminis |
| 64 | 1094248 | 1094493 | + | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 65 | 3800167 | 3800460 | + | NZ_CP020104.1 | Spirosoma aerolatum |
| 66 | 1039668 | 1039919 | + | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 67 | 3077055 | 3077318 | - | NZ_CP054139.1 | Mucilaginibacter mali |
| 68 | 2967670 | 2967942 | - | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 69 | 1238648 | 1238923 | - | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 70 | 3063956 | 3064174 | - | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 71 | 1507811 | 1508086 | - | NZ_AP019367.1 | Parolsenella catena |
| 72 | 193533 | 193802 | - | NZ_AP019367.1 | Parolsenella catena |
| 73 | 2495841 | 2496116 | + | NZ_CP053187.1 | Turicibacter sanguinis |
| 74 | 344104 | 344376 | + | NC_019892.1 | Singulisphaera acidiphila DSM 18658 |
| 75 | 4720831 | 4721115 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 76 | 2893697 | 2893924 | - | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 77 | 390999 | 391253 | + | NZ_CP038810.1 | Flavobacterium sangjuense |
| 78 | 1001725 | 1002003 | + | NC_018664.1 | Gottschalkia acidurici 9a |
| 79 | 1078075 | 1078329 | + | NC_013222.1 | Robiginitalea biformata HTCC2501 |
| 80 | 3943238 | 3943501 | - | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 81 | 4415799 | 4416062 | - | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 82 | 5768111 | 5768395 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 83 | 769457 | 769711 | - | NZ_CP019352.1 | Lacinutrix venerupis |
| 84 | 3039515 | 3039799 | + | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 85 | 3887996 | 3888259 | + | NZ_CP042433.1 | Flavisolibacter ginsenosidimutans |
| 86 | 1602936 | 1603163 | - | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 87 | 1012467 | 1012715 | + | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 88 | 3603118 | 3603399 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 89 | 1198290 | 1198553 | - | NZ_CP034549.1 | Nonlabens ponticola |
| 90 | 261599 | 261853 | + | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 91 | 1190222 | 1190503 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 92 | 7321283 | 7321573 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 93 | 2192411 | 2192686 | + | NZ_LS483470.1 | Leminorella richardii |
| 94 | 2147347 | 2147607 | + | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 95 | 1959917 | 1960138 | - | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 96 | 7019105 | 7019368 | - | NC_015510.1 | Haliscomenobacter hydrossis DSM 1100 |
| 97 | 2171553 | 2171864 | + | NZ_CP017237.1 | Moorella thermoacetica |
| 98 | 207823 | 208086 | - | NC_012780.1 | [Eubacterium] eligens ATCC 27750 |
| 99 | 4800203 | 4800487 | - | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 100 | 1348814 | 1349038 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 101 | 1437979 | 1438203 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 102 | 3912858 | 3913112 | - | NZ_CP032157.1 | Paraflavitalea soli |
| 103 | 278318 | 278605 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 104 | 1585573 | 1585806 | + | NC_015389.1 | Coriobacterium glomerans PW2 |
| 105 | 3062823 | 3063080 | - | NZ_CP040017.1 | Massilia umbonata |
| 106 | 1449848 | 1450105 | + | NZ_CP036401.1 | Massilia albidiflava |
| 107 | 405302 | 405568 | - | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 108 | 2596106 | 2596363 | - | NZ_CP014204.2 | Clostridium baratii |
| 109 | 2057948 | 2058229 | - | NZ_CP029480.1 | Arcticibacterium luteifluviistationis |
| 110 | 1069973 | 1070236 | + | NZ_AP019711.1 | Amedibacterium intestinale |
| 111 | 278580 | 278834 | + | NZ_CP013909.1 | Hymenobacter sedentarius |
| 112 | 481099 | 481317 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 113 | 511411 | 511632 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 114 | 2260985 | 2261245 | + | NZ_CP017688.1 | Flavobacterium crassostreae |
| 115 | 3207332 | 3207571 | + | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 116 | 1787194 | 1787430 | + | NC_017030.1 | Corallococcus coralloides DSM 2259 |
| 117 | 1978198 | 1978434 | - | NC_020126.1 | Myxococcus stipitatus DSM 14675 |
| 118 | 2173096 | 2173341 | + | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 119 | 3188789 | 3189043 | + | NZ_CP050954.1 | Hymenobacter sp. BT18 |
| 120 | 281351 | 281608 | - | NZ_CP015108.1 | Sporosarcina ureae |
| 121 | 711079 | 711342 | - | NZ_CP039712.1 | Vagococcus zengguangii |
| 122 | 225030 | 225293 | + | NC_010001.1 | Lachnoclostridium phytofermentans ISDg |
| 123 | 2462703 | 2462939 | - | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 124 | 1425893 | 1426168 | - | NC_013515.1 | Streptobacillus moniliformis DSM 12112 |
| 125 | 684484 | 684783 | + | NC_014655.1 | Leadbetterella byssophila DSM 17132 |
| 126 | 65846 | 66097 | + | NZ_CP013237.1 | Streptococcus mutans |
| 127 | 484351 | 484602 | + | NZ_AP014612.1 | Streptococcus troglodytae |
| 128 | 1549959 | 1550192 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 129 | 1675042 | 1675275 | - | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP029364.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13630.8 | 0.95 | 120 | -3 | same-strand | SdpI/YfhL protein family |
| 2 | PF07853.13 | 0.93 | 117 | -3.0 | same-strand | Protein of unknown function (DUF1648) |
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