* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF08955.12
|
1.0
|
3
|
3922
|
opposite-strand
|
BofC C-terminal domain
|
2
|
PF08977.12
|
1.0
|
3
|
3922
|
opposite-strand
|
Bypass of Forespore C, N terminal
|
3
|
PF01408.24
|
1.0
|
3
|
1458
|
opposite-strand
|
Oxidoreductase family, NAD-binding Rossmann fold
|
4
|
PF02894.19
|
1.0
|
3
|
1458
|
opposite-strand
|
Oxidoreductase family, C-terminal alpha/beta domain
|
5
|
PF01235.19
|
1.0
|
3
|
269
|
same-strand
|
Sodium:alanine symporter family
|
6
|
PF01709.22
|
1.0
|
3
|
1771
|
opposite-strand
|
Transcriptional regulator
|
7
|
PF01476.22
|
1.0
|
3
|
3354
|
opposite-strand
|
LysM domain
|
8
|
PF02445.18
|
1.0
|
3
|
4635
|
opposite-strand
|
Quinolinate synthetase A protein
|
++ More..