* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP017786.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF08876.13
|
1.0
|
6
|
3401.0
|
opposite-strand
|
Domain of unknown function (DUF1836)
|
2
|
PF01435.20
|
1.0
|
6
|
2291.0
|
same-strand
|
Peptidase family M48
|
3
|
PF02386.18
|
1.0
|
6
|
790.5
|
same-strand
|
Cation transport protein
|
4
|
PF01757.24
|
1.0
|
6
|
41.0
|
opposite-strand
|
Acyltransferase family
|
5
|
PF02518.28
|
1.0
|
6
|
1330.5
|
same-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
6
|
PF08448.12
|
1.0
|
6
|
1330.5
|
same-strand
|
PAS fold
|
7
|
PF13426.9
|
0.83
|
5
|
1342
|
same-strand
|
PAS domain
|
8
|
PF00512.27
|
1.0
|
6
|
1330.5
|
same-strand
|
His Kinase A (phospho-acceptor) domain
|
9
|
PF01035.22
|
1.0
|
6
|
3540.0
|
same-strand
|
6-O-methylguanine DNA methyltransferase, DNA binding domain
|
10
|
PF02870.17
|
1.0
|
6
|
3540.0
|
same-strand
|
6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
|
11
|
PF01008.19
|
1.0
|
6
|
4280.5
|
opposite-strand
|
Initiation factor 2 subunit family
|
12
|
PF00989.27
|
0.83
|
5
|
1342
|
same-strand
|
PAS fold
|
13
|
PF14501.8
|
0.67
|
4
|
1345.0
|
same-strand
|
GHKL domain
|
++ More..