* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034943.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01475.21
|
0.71
|
5
|
9378
|
same-strand
|
Ferric uptake regulator family
|
2
|
PF11023.10
|
0.71
|
5
|
8990
|
opposite-strand
|
Zinc-ribbon containing domain
|
3
|
PF14540.8
|
0.71
|
5
|
7897
|
same-strand
|
Nucleotidyltransferase-like
|
4
|
PF18576.3
|
0.71
|
5
|
7897
|
same-strand
|
Helix-turn-helix domain
|
5
|
PF07070.13
|
1.0
|
7
|
153
|
opposite-strand
|
SpoOM protein
|
6
|
PF03575.19
|
1.0
|
7
|
432
|
same-strand
|
Peptidase family S51
|
7
|
PF01964.20
|
1.0
|
7
|
1432
|
same-strand
|
Radical SAM ThiC family
|
8
|
PF13667.8
|
1.0
|
7
|
1432
|
same-strand
|
ThiC-associated domain
|
9
|
PF00199.21
|
0.71
|
5
|
3561
|
opposite-strand
|
Catalase
|
10
|
PF06628.14
|
0.71
|
5
|
3561
|
opposite-strand
|
Catalase-related immune-responsive
|
11
|
PF07875.14
|
0.71
|
5
|
65
|
opposite-strand
|
Coat F domain
|
++ More..