* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF10263.11
|
0.75
|
3
|
3214
|
same-strand
|
SprT-like family
|
2
|
PF17283.4
|
0.75
|
3
|
3214
|
same-strand
|
SprT-like zinc ribbon domain
|
3
|
PF00589.24
|
0.75
|
3
|
1178.0
|
opposite-strand
|
Phage integrase family
|
4
|
PF14659.8
|
0.75
|
3
|
1178.0
|
opposite-strand
|
Phage integrase, N-terminal SAM-like domain
|
5
|
PF13102.8
|
0.75
|
3
|
1178.0
|
opposite-strand
|
Phage integrase SAM-like domain
|
6
|
PF06114.15
|
1.0
|
4
|
655
|
opposite-strand
|
IrrE N-terminal-like domain
|
7
|
PF01381.24
|
1.0
|
4
|
274.5
|
opposite-strand
|
Helix-turn-helix
|
8
|
PF12844.9
|
1.0
|
4
|
274.5
|
opposite-strand
|
Helix-turn-helix domain
|
9
|
PF13560.8
|
0.75
|
3
|
274
|
opposite-strand
|
Helix-turn-helix domain
|
10
|
PF06125.13
|
1.0
|
4
|
938
|
same-strand
|
Bacterial protein of unknown function (DUF961)
|
11
|
PF02486.21
|
1.0
|
4
|
2792
|
same-strand
|
Replication initiation factor
|
12
|
PF18106.3
|
1.0
|
4
|
2792
|
same-strand
|
Rolling Circle replication initiation protein N-terminal domain
|
++ More..